1.
BEAGLE: An Application Programming Interface and High-Performance Computing Library for Statistical Phylogenetics
by Ayres, Daniel L
Systematic biology, 2012-01-01, Vol.61 (1), p.170-173
2.
SATé-II: Very Fast and Accurate Simultaneous Estimation of Multiple Sequence Alignments and Phylogenetic Trees
by Liu, Kevin
Systematic biology, 2012-01-01, Vol.61 (1), p.90-106
3.
The Posterior and the Prior in Bayesian Phylogenetics
by ALFARO, Michael E
Annual review of ecology, evolution, and systematics, 2006-01-01, Vol.37 (1), p.19-42
4.
Phycas: Software for Bayesian Phylogenetic Analysis
by Lewis, Paul O
Systematic biology, 2015-05-01, Vol.64 (3), p.525-531
5.
NeXML: Rich, Extensible, and Verifiable Representation of Comparative Data and Metadata
by Vos, Rutger A
Systematic biology, 2012-07-01, Vol.61 (4), p.675-689
6.
Polytomies and Bayesian Phylogenetic Inference
by Lewis, Paul O
Systematic biology, 2005-04, Vol.54 (2), p.241-253
7.
A Justification for Reporting the Majority-Rule Consensus Tree in Bayesian Phylogenetics
by Holder, Mark T
Systematic biology, 2008-10, Vol.57 (5), p.814-821
8.
Model Parameterization, Prior Distributions, and the General Time-Reversible Model in Bayesian Phylogenetics
by Zwickl, Derrick J
Systematic biology, 2004-12, Vol.53 (6), p.877-888
9.
Difficulties in Detecting Hybridization
by Holder, Mark T
Systematic biology, 2001-11-01, Vol.50 (6), p.978-982
10.
What's in a Likelihood? Simple Models of Protein Evolution and the Contribution of Structurally Viable Reconstructions to the Likelihood
by Lakner, Clemens
Systematic biology, 2011-03-01, Vol.60 (2), p.161-174
11.
The Akaike Information Criterion Will Not Choose the No Common Mechanism Model
by Holder, Mark T
Systematic biology, 2010-07-01, Vol.59 (4), p.477-485
12.
OpenTree: A Python Package for Accessing and Analyzing Data from the Open Tree of Life
by Mctavish, Emily Jane
Systematic biology, Vol.70 (6), p.1295-1301
13.
EVIDENCE FOR CLIMATE-DRIVEN DIVERSIFICATION? A CAUTION FOR INTERPRETING ABC INFERENCES OF SIMULTANEOUS HISTORICAL EVENTS
by Oaks, Jamie R.
Evolution, 2013-04-01, Vol.67 (4), p.991-1010
14.
Hastings Ratio of the LOCAL Proposal Used in Bayesian Phylogenetics
by Holder, Mark T
Systematic biology, 2005-12, Vol.54 (6), p.961-965
15.
The Relative Importance of Modeling Site Pattern Heterogeneity Versus Partition-Wise Heterotachy in Phylogenomic Inference
by Wang, Huai-Chun
Systematic biology, 2019-11-01, Vol.68 (6), p.1003-1019
16.
Modeling Phylogenetic Biome Shifts on a Planet with a Past
by Landis, Michael
Systematic biology, Vol.70 (1), p.86-107
17.
Estimating Correlated Rates of Trait Evolution with Uncertainty
by Caetano, D S
Systematic biology, 2019-05-01, Vol.68 (3), p.412-429
18.
Bayesian Inference of Ancestral Host–Parasite Interactions under a Phylogenetic Model of Host Repertoire Evolution
by Braga, Mariana P
Systematic biology, Vol.69 (6), p.1149-1162
19.
A Likelihood-Ratio Test for Lumpability of Phylogenetic Data: Is the Markovian Property of an Evolutionary Process Retained in Recoded DNA?
by Vera-Ruiz, Victor A
Systematic biology, Vol.71 (3), p.660-675
20.
Maximum Parsimony Inference of Phylogenetic Networks in the Presence of Polyploid Complexes
by Yan, Zhi
Systematic biology, Vol.71 (3), p.706-720
