1.
Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7
by Rambaut, Andrew
Systematic biology, 2018-09-01, Vol.67 (5), p.901-904

2.
Emerging Concepts of Data Integration in Pathogen Phylodynamics
by Baele, Guy
Systematic biology, 2017-01-01, Vol.66 (1), p.e47-e65

3.
Genealogical Working Distributions for Bayesian Model Testing with Phylogenetic Uncertainty
by Baele, Guy
Systematic biology, 2016-03-01, Vol.65 (2), p.250-264

4.
BEAGLE 3: Improved Performance, Scaling, and Usability for a High-Performance Computing Library for Statistical Phylogenetics
by Ayres, Daniel L
Systematic biology, 2019-11-01, Vol.68 (6), p.1052-1061

5.
Inferring Heterogeneous Evolutionary Processes Through Time: from Sequence Substitution to Phylogeography
by Bielejec, Filip
Systematic biology, 2014-07-01, Vol.63 (4), p.493-504

6.
Phylogenetic Factor Analysis
by Tolkoff, Max R
Systematic biology, 2018-05-01, Vol.67 (3), p.384-399

7.
A Relaxed Directional Random Walk Model for Phylogenetic Trait Evolution
by Gill, Mandev S
Systematic biology, 2017-05-01, Vol.66 (3), p.299-319

8.
Markov-Modulated Continuous-Time Markov Chains to Identify Site- and Branch-Specific Evolutionary Variation in BEAST
by Baele, Guy
Systematic biology, Vol.70 (1), p.181-189

9.
Serum neutralization of SARS-CoV-2 Omicron sublineages BA.1 and BA.2 in patients receiving monoclonal antibodies
by Bruel, Timothée
Nature Medicine, 2022-03-23, Vol.28 (6), p.1297-1302

10.
Disentangling the impact of within-host evolution and transmission dynamics on the tempo of HIV-1 evolution
by Vrancken, Bram
AIDS (London), 2015-07-31, Vol.29 (12), p.1549-1556

11.
A Model-Based Approach to Study Nearest-Neighbor Influences Reveals Complex Substitution Patterns in Non-coding Sequences
by Baele, Guy
Systematic biology, 2008-10, Vol.57 (5), p.675-692

12.
Sub-Epidemics Explain Localized High Prevalence of Reduced Susceptibility to Rilpivirine in Treatment-Naive HIV-1-Infected Patients: Subtype and Geographic Compartmentalization of...
by Theys, Kristof
AIDS research and human retroviruses, 2016-05, Vol.32 (5), p.427-433

13.
Using Non-Reversible Context-Dependent Evolutionary Models to Study Substitution Patterns in Primate Non-Coding Sequences
by Baele, Guy
Journal of molecular evolution, 2010-07-11, Vol.71 (1), p.34-50
