1.
Insights into the dynamics of HIV-1 protease: a kinetic network model constructed from atomistic simulations
by Deng, Nan-Jie
Journal of the American Chemical Society, 22 June 2011, Vol.133(24), pp.9387-94
2.
Free Energy Profile of RNA Hairpins: A Molecular Dynamics Simulation Study
by Deng, Nan-Jie
Biophysical Journal, 2010, Vol.98(4), pp.627-636
3.
How kinetics within the unfolded state affects protein folding: an analysis based on markov state models and an ultra-long MD trajectory
by Deng, Nan-Jie
The journal of physical chemistry. B, 24 October 2013, Vol.117(42), pp.12787-99
4.
NMR relaxation in proteins with fast internal motions and slow conformational exchange: model-free framework and Markov state simulations.
by Xia, Junchao
The journal of physical chemistry. B, June 6, 2013, Vol.117(22), pp.6625-6634
5.
Elucidating the energetics of entropically driven protein-ligand association: calculations of absolute binding free energy and entropy
by Deng, Nan-Jie
The journal of physical chemistry. B, 20 October 2011, Vol.115(41), pp.11902-10
6.
Free Energy Profile of RNA Hairpins: A Molecular Dynamics Simulation Study
by Deng, Nan-Jie
Biophysical Journal, Feb 17, 2010, pp.627-36
7.
Elucidating the energetics of entropically driven protein-ligand association: calculations of absolute binding free energy and entropy.(Report)
by Nan - Jie Deng
Journal of Physical Chemistry B, Oct 20, 2011, Vol.115(41), p.11902-11910
8.
Insights into affinity and specificity in the complexes of α-lytic protease and its inhibitor proteins: binding free energy from molecular dynamics simulation
by Deng, Nan-jie
Physical Chemistry Chemical Physics, 2009, Vol.11(25), pp.4968-4981
9.
How kinetics within the unfolded state affects protein folding: an analysis based on Markov state models and an ultra-long MD trajectory.(Report)
by Nan - Jie Deng
Journal of Physical Chemistry A, Oct 24, 2013, Vol.117(42), p.12787-12799
10.
How long does it take to equilibrate the unfolded state of a protein?
by Levy, Ronald M.
Protein Science, November 2013, Vol.22(11), pp.1459-1465
11.
Molecular Basis for the Cu 2+ Binding-Induced Destabilization of β2-Microglobulin Revealed by Molecular Dynamics Simulation
by Deng, Nan-Jie
Biophysical Journal, 2006, Vol.90(11), pp.3865-3879
12.
Binding Energy Distribution Analysis Method: Hamiltonian Replica Exchange with Torsional Flattening for Binding Mode Prediction and Binding Free Energy Estimation.
by Mentes, Ahmet
Journal of chemical theory and computation, May 10, 2016, Vol.12(5), pp.2459-2470
13.
14.
Molecular Dynamics and Free Energy Study of the Conformational Equilibria in the UUUU RNA Hairpin
by Deng, Nan-Jie
Journal of chemical theory and computation, July 2007, Vol.3(4), pp.1435-50
15.
Effect of Block Structure on the Micellization and Gelation of Aqueous Solutions of Copolymers of Ethylene Oxide and Butylene Oxide
by Yang, Zhuo
Macromolecules, 04/1994, Vol.27(9), pp.2371-2379
16.
Micellization and gelation of block-copoly(oxyethylene/oxybutylene) in aqueous solution
by Tanodekaew, Siriporn
The Journal of Physical Chemistry, 11/1993, Vol.97(45), pp.11847-11852
17.
Common WU polyomavirus infection in a Beijing population indicated by surveillance for serum IgG antibody against capsid protein VP2.(Report)
by Zhang, Ni - Na
World Journal of Pediatrics, Feb, 2013, Vol.9(1), p.48(5)
18.
Automatic Cage Building with Quadric Error Metrics.(Report)
by Deng, Zheng - Jie
Journal of Computer Science and Technology, May, 2011, Vol.26(3), p.538(10)
19.
Gelation of micellar solutions of diblock‐copoly (oxyethylene/oxybutylene) in aqueous K 2 SO 4 . An investigation of excluded volume effects
by Deng, Nan‐Jie
Journal of Polymer Science Part B: Polymer Physics, May 1995, Vol.33(7), pp.1085-1096
20.
Micellisation and gelation of triblock copolymer of ethylene oxide and ϵ-caprolactone, CL n E m CL n , in aqueous solution
by Martini, Luigi
Journal of the Chemical Society, Faraday Transactions, 1994, Vol.90(13), pp.1961-1966
