1.
Full-length transcriptome assembly from RNA-Seq data without a reference genome
by Friedman, Nir
Nature biotechnology, 2011, Vol.29 (7), p.644-652

2.
Wishbone identifies bifurcating developmental trajectories from single-cell data
by Setty, Manu
Nature biotechnology, 2016, Vol.34 (6), p.637-645

3.
Metabolic labeling of RNA uncovers principles of RNA production and degradation dynamics in mammalian cells
by Friedman, Nir
Nature biotechnology, 2011, Vol.29 (5), p.436-442

4.
Natural history and evolutionary principles of gene duplication in fungi
by Friedman, Nir
Nature (London), 2007, Vol.449 (7158), p.54-61

5.
Stochastic protein expression in individual cells at the single molecule level
by Xie, X. Sunney
Nature, 2006, Vol.440 (7082), p.358-362

6.
Being Bayesian About Network Structure. A Bayesian Approach to Structure Discovery in Bayesian Networks
by Friedman, Nir
Machine learning, 2003, Vol.50 (1-2), p.95-125

7.
Pediatric residents’ simulation-based training in patient safety during sedation
by Friedman, Nir
European journal of pediatrics, 2018, Vol.177 (12), p.1863-1867

9.
Human and porcine early kidney precursors as a new source for transplantation
by Reisner, Yair
Nature medicine, 2003, Vol.9 (1), p.53-60

10.
Trinity: reconstructing a full-length transcriptome without a genome from RNA-Seq data
by Grabherr, Manfred G. Manfred G.
Nature biotechnology, 2011, Vol.29 (7), p.644-652

11.
Using Bayesian networks to analyze expression data
by Friedman, N
Journal of computational biology, 2000, Vol.7 (3-4), p.601-620

12.
Context-specific Bayesian clustering for gene expression data
by Barash, Yoseph
Journal of computational biology, 2002, Vol.9 (2), p.169-191

13.
Tissue classification with gene expression profiles
by Ben-Dor, A
Journal of computational biology, 2000, Vol.7 (3-4), p.559-583

14.
Transcriptional Profiling of Non-small Cell Lung Cancer Using Oligonucleotide Microarrays
by Cojocaru, Gady
Chest, 2002, Vol.121 (3), p.44S-44S

15.
A structural EM algorithm for phylogenetic inference
by Friedman, Nir
Journal of computational biology, 2002, Vol.9 (2), p.331-353

16.
Towards an integrated protein-protein interaction network: a relational Markov network approach
by Jaimovich, Ariel
Journal of computational biology, 2006, Vol.13 (2), p.145-164

17.
Efficient Exact p -Value Computation for Small Sample, Sparse, and Surprising Categorical Data
by Bejerano, Gill
Journal of computational biology, 2004, Vol.11 (5), p.867-886

18.
Stochastic protein expression in individual cells at the single molecule level
by Cai, Long
Nature, 2006, Vol.440 (7082), p.358-362

19.
Natural history and evolutionary principles of gene duplication in fungi
by WAPINSKI, Llan
Nature (London), 2007, Vol.448 (7158), p.54-61

20.
Efficient exact p-value computation for small sample, sparse, and surprising categorical data
by Bejerano, Gill
Journal of computational biology, 2004, Vol.11 (5), p.867-886
