1.
New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0
by Guindon, Stéphane
Systematic biology, 2010-03-29, Vol.59 (3), p.307-321

2.
Sequence-Based Species Delimitation for the DNA Taxonomy of Undescribed Insects
by Pons, Joan
Systematic biology, 2006-08, Vol.55 (4), p.595-609

3.
Bayesian Tip-Dated Phylogenetics in Paleontology: Topological Effects and Stratigraphic Fit
by King, Benedict
Systematic biology, Vol.70 (2), p.283-294

4.
A Bayesian Method for Analyzing Lateral Gene Transfer
by Sjöstrand, Joel
Systematic biology, 2014-05-01, Vol.63 (3), p.409-420

5.
Improvement of Phylogenies after Removing Divergent and Ambiguously Aligned Blocks from Protein Sequence Alignments
by Talavera, Gerard
Systematic biology, 2007-08, Vol.56 (4), p.564-577

6.
Missing Data in Phylogenetic Analysis: Reconciling Results from Simulations and Empirical Data
by Wiens, John J
Systematic biology, 2011-10-01, Vol.60 (5), p.719-731

7.
Identifying Hidden Rate Changes in the Evolution of a Binary Morphological Character: The Evolution of Plant Habit in Campanulid Angiosperms
by Beaulieu, Jeremy M
Systematic biology, 2013-09-01, Vol.62 (5), p.725-737

8.
A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood
by Guindon, Stéphane
Systematic biology, 2003-10-01, Vol.52 (5), p.696-704

9.
Genomic Outposts Serve the Phylogenomic Pioneers: Designing Novel Nuclear Markers for Genomic DNA Extractions of Lepidoptera
by Wahlberg, Niklas
Systematic biology, 2008-04, Vol.57 (2), p.231-242

10.
Testing and Quantifying Phylogenetic Signals and Homoplasy in Morphometric Data
by Klingenberg, Christian Peter
Systematic biology, 2010-05, Vol.59 (3), p.245-261

11.
Mapping Mutations on Phylogenies
by Nielsen, Rasmus
Systematic biology, 2002-09-01, Vol.51 (5), p.729-739

12.
The More, the Better: The Use of Multiple Landmark Configurations to Solve the Phylogenetic Relationships in Musteloids
by Catalano, Santiago A
Systematic biology, 2015-03-01, Vol.64 (2), p.294-306

13.
The Limitations of Ancestral State Reconstruction and the Evolution of the Ascus in the Lecanorales (Lichenized Ascomycota)
by Ekman, Stefan
Systematic biology, 2008-02, Vol.57 (1), p.141-156

14.
Can Incomplete Taxa Rescue Phylogenetic Analyses from Long-Branch Attraction?
by Wiens, John J.
Systematic biology, 2005-10, Vol.54 (5), p.731-742

15.
A Monte Carlo Approach Successfully Identifies Randomness in Multiple Sequence Alignments: A More Objective Means of Data Exclusion
by Misof, Bernhard
Systematic biology, 2009-02-01, Vol.58 (1), p.21-34

16.
Parsimonious Inference of Hybridization in the Presence of Incomplete Lineage Sorting
by Yu, Yun
Systematic biology, 2013-09-01, Vol.62 (5), p.738-751

17.
Combining Phylogenomics and Fossils in Higher-Level Squamate Reptile Phylogeny: Molecular Data Change the Placement of Fossil Taxa
by Wiens, John J.
Systematic biology, 2010-12, Vol.59 (6), p.674-688

18.
Constructing Phylogenies in the Presence Of Intra-Individual Site Polymorphisms (2ISPs) with a Focus on the Nuclear Ribosomal Cistron
by Potts, Alastair J
Systematic biology, 2014-01-01, Vol.63 (1), p.1-16

19.
Accounting for Phylogenetic Uncertainty in Biogeography: A Bayesian Approach to Dispersal-Vicariance Analysis of the Thrushes (Aves: Turdus)
by Nylander, Johan A. A.
Systematic biology, 2008-04, Vol.57 (2), p.257-268

20.
Bayesian Phylogenetic Analysis of Combined Data
by Nylander, Johan A. A.
Systematic biology, 2004-02, Vol.53 (1), p.47-67
