1.
MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space
by Ronquist, Fredrik
Systematic biology, 2012-05-01, Vol.61 (3), p.539-542
2.
BEAGLE 3: Improved Performance, Scaling, and Usability for a High-Performance Computing Library for Statistical Phylogenetics
by Ayres, Daniel L
Systematic biology, 2019-11-01, Vol.68 (6), p.1052-1061
3.
RevBayes: Bayesian Phylogenetic Inference Using Graphical Models and an Interactive Model-Specification Language
by Höhna, Sebastian
Systematic biology, 2016-07-01, Vol.65 (4), p.726-736
4.
A Gateway for Phylogenetic Analysis Powered by Grid Computing Featuring GARLI 2.0
by Bazinet, Adam L
Systematic biology, 2014-09-01, Vol.63 (5), p.812-818
5.
Pruning Rogue Taxa Improves Phylogenetic Accuracy: An Efficient Algorithm and Webservice
by Aberer, Andre J
Systematic biology, 2013-01-01, Vol.62 (1), p.162-166
6.
The Phylogenetic Likelihood Library
by Flouri, T
Systematic biology, 2015-03-01, Vol.64 (2), p.356-362
7.
SimPhy: Phylogenomic Simulation of Gene, Locus, and Species Trees
by Mallo, Diego
Systematic biology, 2016-03-01, Vol.65 (2), p.334-344
8.
EPA-ng: Massively Parallel Evolutionary Placement of Genetic Sequences
by Barbera, Pierre
Systematic biology, 2019-03-01, Vol.68 (2), p.365-369
9.
Dendroscope 3: An Interactive Tool for Rooted Phylogenetic Trees and Networks
by Huson, Daniel H
Systematic biology, 2012-12-01, Vol.61 (6), p.1061-1067
10.
APPLES: Scalable Distance-Based Phylogenetic Placement with or without Alignments
by Balaban, Metin Metin
Systematic biology, 2019-09-23, Vol.69 (3), p.566-578
11.
ProtASR: An Evolutionary Framework for Ancestral Protein Reconstruction with Selection on Folding Stability
by Arenas, Miguel
Systematic biology, 2017-11-01, Vol.66 (6), p.1054-1064
12.
Phycas: Software for Bayesian Phylogenetic Analysis
by Lewis, Paul O
Systematic biology, 2015-05-01, Vol.64 (3), p.525-531
13.
IKey+: A New Single-Access Key Generation Web Service
by Burguiere, Thomas
Systematic biology, 2013-01-01, Vol.62 (1), p.157-161
14.
A Linear-Time Algorithm for Gaussian and Non-Gaussian Trait Evolution Models
by Ho, Lam si Tung
Systematic biology, 2014-05-01, Vol.63 (3), p.397-408
15.
Computational Performance and Statistical Accuracy of BEAST and Comparisons with Other Methods
by Ogilvie, Huw A
Systematic biology, 2016-05-01, Vol.65 (3), p.381-396
16.
Generalized Bootstrap Supports for Phylogenetic Analyses of Protein Sequences Incorporating Alignment Uncertainty
by Chatzou, Maria
Systematic biology, 2018-11-01, Vol.67 (6), p.997-1009
17.
Probabilistic Graphical Model Representation in Phylogenetics
by Höhna, Sebastian
Systematic biology, 2014-09-01, Vol.63 (5), p.753-771
18.
SpeciesGeoCoder: Fast Categorization of Species Occurrences for Analyses of Biodiversity, Biogeography, Ecology, and Evolution
by Töpel, Mats
Systematic biology, 2017-03-01, Vol.66 (2), p.145-151
19.
The Impact of the Representation of Fossil Calibrations on Bayesian Estimation of Species Divergence Times
by Inoue, Jun
Systematic biology, 2009-11-25, Vol.59 (1), p.74-89
20.
Assessing Approaches for Inferring Species Trees from Multi-Copy Genes
by Chaudhary, Ruchi
Systematic biology, 2015-03-01, Vol.64 (2), p.325-339
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