1.
BEAGLE: An Application Programming Interface and High-Performance Computing Library for Statistical Phylogenetics
by Ayres, Daniel L
Systematic biology, 2012-01-01, Vol.61 (1), p.170-173

2.
MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space
by Ronquist, Fredrik
Systematic biology, 2012-05-01, Vol.61 (3), p.539-542

3.
RevBayes: Bayesian Phylogenetic Inference Using Graphical Models and an Interactive Model-Specification Language
by Höhna, Sebastian
Systematic biology, 2016-07-01, Vol.65 (4), p.726-736

4.
Dendroscope 3: An Interactive Tool for Rooted Phylogenetic Trees and Networks
by Huson, Daniel H
Systematic biology, 2012-12-01, Vol.61 (6), p.1061-1067

5.
An Intuitive, Informative, and Most Balanced Representation of Phylogenetic Topologies
by Iwasaki, Wataru
Systematic biology, 2010-10, Vol.59 (5), p.584-593
