1.
PASTA: Ultra-Large Multiple Sequence Alignment for Nucleotide and Amino-Acid Sequences
by Mirarab, Siavash
Journal of computational biology, 2015-05-01, Vol.22 (5), p.377-386
2.
Current Methods for Automated Filtering of Multiple Sequence Alignments Frequently Worsen Single-Gene Phylogenetic Inference
by Tan, Ge
Systematic biology, 2015-09-01, Vol.64 (5), p.778-791
3.
Improvement of Phylogenies after Removing Divergent and Ambiguously Aligned Blocks from Protein Sequence Alignments
by Talavera, Gerard
Systematic biology, 2007-08, Vol.56 (4), p.564-577
4.
SATé-II: Very Fast and Accurate Simultaneous Estimation of Multiple Sequence Alignments and Phylogenetic Trees
by Liu, Kevin
Systematic biology, 2012-01-01, Vol.61 (1), p.90-106
5.
A Monte Carlo Approach Successfully Identifies Randomness in Multiple Sequence Alignments: A More Objective Means of Data Exclusion
by Misof, Bernhard
Systematic biology, 2009-02-01, Vol.58 (1), p.21-34
6.
Evaluating Statistical Multiple Sequence Alignment in Comparison to Other Alignment Methods on Protein Data Sets
by Nute, Michael
Systematic biology, 2019-05-01, Vol.68 (3), p.396-411
7.
Multiple Sequence Alignment Averaging Improves Phylogeny Reconstruction
by Ashkenazy, Haim
Systematic biology, 2019-01-01, Vol.68 (1), p.117-130
8.
Multiple Sequence Alignment Accuracy and Phylogenetic Inference
by Ogden, T. Heath
Systematic biology, 2006-04, Vol.55 (2), p.314-328
9.
BLAST 2 SEQUENCES, a new tool for comparing protein and nucleotide sequences
by TATUSOVA, T. A
FEMS microbiology letters, 1999, Vol.174 (2), p.247-250
10.
Alignment-free sequence comparison (II): theoretical power of comparison statistics
by Wan, Lin
Journal of computational biology, 2010-11, Vol.17 (11), p.1467-1490
11.
Sequence Alignment on Directed Graphs
by Kavya, Vaddadi Naga Sai
Journal of computational biology, 2019-01-01, Vol.26 (1), p.53-67
12.
Generalized Bootstrap Supports for Phylogenetic Analyses of Protein Sequences Incorporating Alignment Uncertainty
by Chatzou, Maria
Systematic biology, 2018-11-01, Vol.67 (6), p.997-1009
13.
A greedy algorithm for aligning DNA sequences
by Zhang, Z
Journal of computational biology, 2000-02, Vol.7 (1-2), p.203-214
14.
Maximum Likelihood Phylogenetic Inference is Consistent on Multiple Sequence Alignments, with or without Gaps
by Truszkowski, Jakub
Systematic biology, 2016-03-01, Vol.65 (2), p.328-333
15.
Where did the BLOSUM62 alignment score matrix come from?
by Eddy, Sean R
Nature biotechnology, 2004-08, Vol.22 (8), p.1035-1036
16.
Using Variable-Length Aligned Fragment Pairs and an Improved Transition Function for Flexible Protein Structure Alignment
by Cao, Hu
Journal of computational biology, 2017-01-01, Vol.24 (1), p.2-12
17.
Simultaneous Statistical Multiple Alignment and Phylogeny Reconstruction
by Fleissner, Roland
Systematic biology, 2005-08, Vol.54 (4), p.548-561
18.
Molecular analysis of leptospires from serogroup Sejroe obtained from asymptomatic cattle in Rio de Janeiro — Brazil reveals genetic proximity to serovar Guaricura
by Loureiro, A.P
Research in veterinary science, 2016-04, Vol.105, p.249-253
19.
20.
Opinions on Multiple Sequence Alignment, and an Empirical Comparison of Repeatability and Accuracy between POY and Structural Alignment
by Kjer, Karl M.
Systematic biology, 2007-02, Vol.56 (1), p.133-146
