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Marinobacter shengliensis sp. nov., a moderately halophilic bacterium isolated from oil-contaminated saline soil

Two moderately halophilic strains, designated SL013A34A2 T and SL013A24A, were isolated from oil-contaminated saline soil from Shengli Oilfield, eastern China. Cells were found to be Gram-staining negative, aerobic, rod-shaped with a single polar flagellum. The isolates were found to grow at 10–40 °... Full description

Journal Title: Antonie van Leeuwenhoek 2015-02-05, Vol.107 (4), p.1085-1094
Main Author: Luo, Yi-Jing
Other Authors: Xie, Bai-Sheng , Lv, Xiang-Lin , Cai, Man , Wang, Ya-Nan , Cui, Heng-Lin , Cai, Hua , Wu, Xiao-Lei
Format: Electronic Article Electronic Article
Language: English
Subjects:
RNA
Publisher: Cham: Springer International Publishing
ID: ISSN: 0003-6072
Link: https://www.ncbi.nlm.nih.gov/pubmed/25652339
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title: Marinobacter shengliensis sp. nov., a moderately halophilic bacterium isolated from oil-contaminated saline soil
format: Article
creator:
  • Luo, Yi-Jing
  • Xie, Bai-Sheng
  • Lv, Xiang-Lin
  • Cai, Man
  • Wang, Ya-Nan
  • Cui, Heng-Lin
  • Cai, Hua
  • Wu, Xiao-Lei
subjects:
  • Aerobiosis
  • Analysis
  • Bacteria
  • Bacterial Typing Techniques
  • Base Composition
  • Biomedical and Life Sciences
  • China
  • Cluster Analysis
  • Cytosol - chemistry
  • DNA, Ribosomal - chemistry
  • DNA, Ribosomal - genetics
  • Environmental Pollution
  • Fatty acids
  • Fatty Acids - analysis
  • Flagella - ultrastructure
  • Glycolipids - analysis
  • Hydrogen-Ion Concentration
  • Life Sciences
  • Marinobacter
  • Marinobacter - classification
  • Marinobacter - genetics
  • Marinobacter - isolation & purification
  • Marinobacter - physiology
  • Medical Microbiology
  • Microbiology
  • Microscopy, Electron, Transmission
  • Molecular Sequence Data
  • Nucleic Acid Hybridization
  • Oil fields
  • Oils
  • Original Paper
  • Phospholipids - analysis
  • Phylogeny
  • Plant Sciences
  • Quinones - analysis
  • RNA
  • RNA, Bacterial - chemistry
  • RNA, Bacterial - genetics
  • RNA, Ribosomal, 16S - genetics
  • Sequence Analysis, DNA
  • Sodium Chloride - metabolism
  • Soil Microbiology
  • Soil Science & Conservation
  • Temperature
ispartof: Antonie van Leeuwenhoek, 2015-02-05, Vol.107 (4), p.1085-1094
description: Two moderately halophilic strains, designated SL013A34A2 T and SL013A24A, were isolated from oil-contaminated saline soil from Shengli Oilfield, eastern China. Cells were found to be Gram-staining negative, aerobic, rod-shaped with a single polar flagellum. The isolates were found to grow at 10–40 °C (optimum 35 °C), pH 6.0–9.0 (optimum pH 8.0), and NaCl concentrations of 0.5–18.0 % (w/v) (optimum 3.0–6.0 NaCl). The 16S rRNA gene sequence analysis indicated that the isolates belong to the genus Marinobacter . Strain SL013A34A2 T shares the highest 16S rRNA gene sequence similarities with strain SL013A24A (99.3 %), followed by M. hydrocarbonoclasticus CGMCC 1.7683 T (97.8 %), M. vinifirmus CGMCC 1.7265 T (97.8 %), and M. excellens KMM 3809 T (97.4 %), respectively, but low similarities (93.8–96.4 %) with type strains of the other numbers of genus Marinobacter . DNA–DNA relatedness values of strain SL013A34A2 T with strains SL013A24A, M. hydrocarbonoclasticus CGMCC 1.7683 T , M. vinifirmus CGMCC 1.7265 T and M. excellens KMM 3809 T were 88.7, 29.2, 33.4 and 29.4 %, respectively. The major fatty acids of strain SL013A34A2 T were identified as C 18:1 ω 9 c , C 16:0 , C 12:0 3-OH, C 12:0 , C 16:1 ω 9 c and 10-methyl C 18:0 . The major respiratory quinone of strain SL013A34A2 T was found to be ubiquinone-9, and its predominant polar lipids were identified as diphosphatidylglycerol, phosphatidylcholine, phosphatidylethanolamine, phosphatidylglycerol and unidentified glycolipid. The genomic DNA G + C content was found to be 56.1 mol %. Based on the phenotypic, genetic and chemotaxonomic characteristics, these two isolates are representatives of a novel species of the genus Marinobacter , for which the name Marinobacter shengliensis sp. nov. is proposed. The type strain is SL013A34A2 T (=LMG 27740 T  = CGMCC 1.12758 T ).
language: eng
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identifier: ISSN: 0003-6072
fulltext: no_fulltext
issn:
  • 0003-6072
  • 1572-9699
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titleMarinobacter shengliensis sp. nov., a moderately halophilic bacterium isolated from oil-contaminated saline soil
creatorLuo, Yi-Jing ; Xie, Bai-Sheng ; Lv, Xiang-Lin ; Cai, Man ; Wang, Ya-Nan ; Cui, Heng-Lin ; Cai, Hua ; Wu, Xiao-Lei
creatorcontribLuo, Yi-Jing ; Xie, Bai-Sheng ; Lv, Xiang-Lin ; Cai, Man ; Wang, Ya-Nan ; Cui, Heng-Lin ; Cai, Hua ; Wu, Xiao-Lei
descriptionTwo moderately halophilic strains, designated SL013A34A2 T and SL013A24A, were isolated from oil-contaminated saline soil from Shengli Oilfield, eastern China. Cells were found to be Gram-staining negative, aerobic, rod-shaped with a single polar flagellum. The isolates were found to grow at 10–40 °C (optimum 35 °C), pH 6.0–9.0 (optimum pH 8.0), and NaCl concentrations of 0.5–18.0 % (w/v) (optimum 3.0–6.0 NaCl). The 16S rRNA gene sequence analysis indicated that the isolates belong to the genus Marinobacter . Strain SL013A34A2 T shares the highest 16S rRNA gene sequence similarities with strain SL013A24A (99.3 %), followed by M. hydrocarbonoclasticus CGMCC 1.7683 T (97.8 %), M. vinifirmus CGMCC 1.7265 T (97.8 %), and M. excellens KMM 3809 T (97.4 %), respectively, but low similarities (93.8–96.4 %) with type strains of the other numbers of genus Marinobacter . DNA–DNA relatedness values of strain SL013A34A2 T with strains SL013A24A, M. hydrocarbonoclasticus CGMCC 1.7683 T , M. vinifirmus CGMCC 1.7265 T and M. excellens KMM 3809 T were 88.7, 29.2, 33.4 and 29.4 %, respectively. The major fatty acids of strain SL013A34A2 T were identified as C 18:1 ω 9 c , C 16:0 , C 12:0 3-OH, C 12:0 , C 16:1 ω 9 c and 10-methyl C 18:0 . The major respiratory quinone of strain SL013A34A2 T was found to be ubiquinone-9, and its predominant polar lipids were identified as diphosphatidylglycerol, phosphatidylcholine, phosphatidylethanolamine, phosphatidylglycerol and unidentified glycolipid. The genomic DNA G + C content was found to be 56.1 mol %. Based on the phenotypic, genetic and chemotaxonomic characteristics, these two isolates are representatives of a novel species of the genus Marinobacter , for which the name Marinobacter shengliensis sp. nov. is proposed. The type strain is SL013A34A2 T (=LMG 27740 T  = CGMCC 1.12758 T ).
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languageeng
publisherCham: Springer International Publishing
subjectAerobiosis ; Analysis ; Bacteria ; Bacterial Typing Techniques ; Base Composition ; Biomedical and Life Sciences ; China ; Cluster Analysis ; Cytosol - chemistry ; DNA, Ribosomal - chemistry ; DNA, Ribosomal - genetics ; Environmental Pollution ; Fatty acids ; Fatty Acids - analysis ; Flagella - ultrastructure ; Glycolipids - analysis ; Hydrogen-Ion Concentration ; Life Sciences ; Marinobacter ; Marinobacter - classification ; Marinobacter - genetics ; Marinobacter - isolation & purification ; Marinobacter - physiology ; Medical Microbiology ; Microbiology ; Microscopy, Electron, Transmission ; Molecular Sequence Data ; Nucleic Acid Hybridization ; Oil fields ; Oils ; Original Paper ; Phospholipids - analysis ; Phylogeny ; Plant Sciences ; Quinones - analysis ; RNA ; RNA, Bacterial - chemistry ; RNA, Bacterial - genetics ; RNA, Ribosomal, 16S - genetics ; Sequence Analysis, DNA ; Sodium Chloride - metabolism ; Soil Microbiology ; Soil Science & Conservation ; Temperature
ispartofAntonie van Leeuwenhoek, 2015-02-05, Vol.107 (4), p.1085-1094
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0Marinobacter shengliensis sp. nov., a moderately halophilic bacterium isolated from oil-contaminated saline soil
1Antonie van Leeuwenhoek
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descriptionTwo moderately halophilic strains, designated SL013A34A2 T and SL013A24A, were isolated from oil-contaminated saline soil from Shengli Oilfield, eastern China. Cells were found to be Gram-staining negative, aerobic, rod-shaped with a single polar flagellum. The isolates were found to grow at 10–40 °C (optimum 35 °C), pH 6.0–9.0 (optimum pH 8.0), and NaCl concentrations of 0.5–18.0 % (w/v) (optimum 3.0–6.0 NaCl). The 16S rRNA gene sequence analysis indicated that the isolates belong to the genus Marinobacter . Strain SL013A34A2 T shares the highest 16S rRNA gene sequence similarities with strain SL013A24A (99.3 %), followed by M. hydrocarbonoclasticus CGMCC 1.7683 T (97.8 %), M. vinifirmus CGMCC 1.7265 T (97.8 %), and M. excellens KMM 3809 T (97.4 %), respectively, but low similarities (93.8–96.4 %) with type strains of the other numbers of genus Marinobacter . DNA–DNA relatedness values of strain SL013A34A2 T with strains SL013A24A, M. hydrocarbonoclasticus CGMCC 1.7683 T , M. vinifirmus CGMCC 1.7265 T and M. excellens KMM 3809 T were 88.7, 29.2, 33.4 and 29.4 %, respectively. The major fatty acids of strain SL013A34A2 T were identified as C 18:1 ω 9 c , C 16:0 , C 12:0 3-OH, C 12:0 , C 16:1 ω 9 c and 10-methyl C 18:0 . The major respiratory quinone of strain SL013A34A2 T was found to be ubiquinone-9, and its predominant polar lipids were identified as diphosphatidylglycerol, phosphatidylcholine, phosphatidylethanolamine, phosphatidylglycerol and unidentified glycolipid. The genomic DNA G + C content was found to be 56.1 mol %. Based on the phenotypic, genetic and chemotaxonomic characteristics, these two isolates are representatives of a novel species of the genus Marinobacter , for which the name Marinobacter shengliensis sp. nov. is proposed. The type strain is SL013A34A2 T (=LMG 27740 T  = CGMCC 1.12758 T ).
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1Analysis
2Bacteria
3Bacterial Typing Techniques
4Base Composition
5Biomedical and Life Sciences
6China
7Cluster Analysis
8Cytosol - chemistry
9DNA, Ribosomal - chemistry
10DNA, Ribosomal - genetics
11Environmental Pollution
12Fatty acids
13Fatty Acids - analysis
14Flagella - ultrastructure
15Glycolipids - analysis
16Hydrogen-Ion Concentration
17Life Sciences
18Marinobacter
19Marinobacter - classification
20Marinobacter - genetics
21Marinobacter - isolation & purification
22Marinobacter - physiology
23Medical Microbiology
24Microbiology
25Microscopy, Electron, Transmission
26Molecular Sequence Data
27Nucleic Acid Hybridization
28Oil fields
29Oils
30Original Paper
31Phospholipids - analysis
32Phylogeny
33Plant Sciences
34Quinones - analysis
35RNA
36RNA, Bacterial - chemistry
37RNA, Bacterial - genetics
38RNA, Ribosomal, 16S - genetics
39Sequence Analysis, DNA
40Sodium Chloride - metabolism
41Soil Microbiology
42Soil Science & Conservation
43Temperature
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titleMarinobacter shengliensis sp. nov., a moderately halophilic bacterium isolated from oil-contaminated saline soil
authorLuo, Yi-Jing ; Xie, Bai-Sheng ; Lv, Xiang-Lin ; Cai, Man ; Wang, Ya-Nan ; Cui, Heng-Lin ; Cai, Hua ; Wu, Xiao-Lei
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3Bacterial Typing Techniques
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8Cytosol - chemistry
9DNA, Ribosomal - chemistry
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39Sequence Analysis, DNA
40Sodium Chloride - metabolism
41Soil Microbiology
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abstractTwo moderately halophilic strains, designated SL013A34A2 T and SL013A24A, were isolated from oil-contaminated saline soil from Shengli Oilfield, eastern China. Cells were found to be Gram-staining negative, aerobic, rod-shaped with a single polar flagellum. The isolates were found to grow at 10–40 °C (optimum 35 °C), pH 6.0–9.0 (optimum pH 8.0), and NaCl concentrations of 0.5–18.0 % (w/v) (optimum 3.0–6.0 NaCl). The 16S rRNA gene sequence analysis indicated that the isolates belong to the genus Marinobacter . Strain SL013A34A2 T shares the highest 16S rRNA gene sequence similarities with strain SL013A24A (99.3 %), followed by M. hydrocarbonoclasticus CGMCC 1.7683 T (97.8 %), M. vinifirmus CGMCC 1.7265 T (97.8 %), and M. excellens KMM 3809 T (97.4 %), respectively, but low similarities (93.8–96.4 %) with type strains of the other numbers of genus Marinobacter . DNA–DNA relatedness values of strain SL013A34A2 T with strains SL013A24A, M. hydrocarbonoclasticus CGMCC 1.7683 T , M. vinifirmus CGMCC 1.7265 T and M. excellens KMM 3809 T were 88.7, 29.2, 33.4 and 29.4 %, respectively. The major fatty acids of strain SL013A34A2 T were identified as C 18:1 ω 9 c , C 16:0 , C 12:0 3-OH, C 12:0 , C 16:1 ω 9 c and 10-methyl C 18:0 . The major respiratory quinone of strain SL013A34A2 T was found to be ubiquinone-9, and its predominant polar lipids were identified as diphosphatidylglycerol, phosphatidylcholine, phosphatidylethanolamine, phosphatidylglycerol and unidentified glycolipid. The genomic DNA G + C content was found to be 56.1 mol %. Based on the phenotypic, genetic and chemotaxonomic characteristics, these two isolates are representatives of a novel species of the genus Marinobacter , for which the name Marinobacter shengliensis sp. nov. is proposed. The type strain is SL013A34A2 T (=LMG 27740 T  = CGMCC 1.12758 T ).
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pubSpringer International Publishing
pmid25652339
doi10.1007/s10482-015-0401-y