schliessen

Filtern

 

Bibliotheken

Cover Image

Association of white clover (Trifolium repens L.) with rhizobia of sv. trifolii belonging to three genomic species in alkaline soils in North and East China

Aims Rhizobia associated with white clover (Trifolium repens) grown in alkaline soils of China have never been investigated. This is the first survey to report of their genetic and biogeographical diversity. Methods Nodule bacteria were isolated from white clover grown in alkaline soils (pH 8.18–8.9... Full description

Journal Title: Plant and soil 2016, Vol.407 (1/2), p.417-427
Main Author: Zhang, Jun Jie
Other Authors: Jing, Xiao Yan , de Lajudie, Philippe , Ma, Chuang , He, Pei Xin , Singh, Raghvendra Pratap , Chen, Wen Feng , Wang, En Tao
Format: Electronic Article Electronic Article
Language: English
Subjects:
Alkaline soils
Bacteria
Biodiversity
Biomedical and Life Sciences
Clover
Ecology
Flowers & plants
Genes
Genetic aspects
Genomics
Health aspects
Life Sciences
Phylogenetics
Plant Physiology
Plant Sciences
Plant-soil relationships
Regular Article
Rhizobium
rRNA genes
Soil organic matter
Soil samples
Soil Science & Conservation
Soils
Symbiosis
Trifolium repens
Publisher: Cham: Springer
ID: ISSN: 0032-079X
Zum Text:
SendSend as email Add to Book BagAdd to Book Bag
Staff View
recordid: cdi_proquest_miscellaneous_1827886340
title: Association of white clover (Trifolium repens L.) with rhizobia of sv. trifolii belonging to three genomic species in alkaline soils in North and East China
format: Article
creator:
  • Zhang, Jun Jie
  • Jing, Xiao Yan
  • de Lajudie, Philippe
  • Ma, Chuang
  • He, Pei Xin
  • Singh, Raghvendra Pratap
  • Chen, Wen Feng
  • Wang, En Tao
subjects:
  • Alkaline soils
  • Bacteria
  • Biodiversity
  • Biomedical and Life Sciences
  • Clover
  • Ecology
  • Flowers & plants
  • Genes
  • Genetic aspects
  • Genomics
  • Health aspects
  • Life Sciences
  • Phylogenetics
  • Plant Physiology
  • Plant Sciences
  • Plant-soil relationships
  • Regular Article
  • Rhizobium
  • rRNA genes
  • Soil organic matter
  • Soil samples
  • Soil Science & Conservation
  • Soils
  • Symbiosis
  • Trifolium repens
ispartof: Plant and soil, 2016, Vol.407 (1/2), p.417-427
description: Aims Rhizobia associated with white clover (Trifolium repens) grown in alkaline soils of China have never been investigated. This is the first survey to report of their genetic and biogeographical diversity. Methods Nodule bacteria were isolated from white clover grown in alkaline soils (pH 8.18–8.99) in North and East China and were characterized by multilocus sequence analysis (MLSA) of the housekeeping genes (atpD, recA, and glnII), and phylogenies of 16S rRNA gene and symbiotic genes nodC and nifH. The biogeographic distribution of rhizobial species was analyzed in relation to the soil factors. Results A total of 83 new strains could be affiliated to Rhizobium that shared 100 % sequence similarity of 16S rRNA gene with R. leguminosarum, R. acidisoli, R. anhuiense, R. indigoferae, R. sophorae, and R. laguerreae. Three genospecies were further distinguished based on the housekeeping gene analysis among these new strains: R. anhuiense, R. leguminosarum, and a hypothetical novel Rhizobium genospecies. Highly conserved symbiotic genes corresponding to those of symbiovar trifolii in R. leguminosarum were observed among all the new strains. Unique rhizobial communities associated with white clover were detected in the tested alkaline soils, and soil characteristics such as pH and nutrient levels were estimated as the determinant factors. Conclusions White clover established symbiosis with three Rhizobium genospecies harboring similar symbiotic genes in alkaline soils in China. Biogeographic pattern exists in clover rhizobia that was determined by the soil pH and nutrient levels.
language: eng
source:
identifier: ISSN: 0032-079X
fulltext: no_fulltext
issn:
  • 0032-079X
  • 1573-5036
url: Link


@attributes
NO1
SEARCH_ENGINEprimo_central_multiple_fe
SEARCH_ENGINE_TYPEPrimo Central Search Engine
RANK2.5481758
LOCALfalse
PrimoNMBib
record
control
sourceidgale_proqu
recordidTN_cdi_proquest_miscellaneous_1827886340
sourceformatXML
sourcesystemPC
galeidA470718510
jstor_id44136935
sourcerecordidA470718510
originalsourceidFETCH-LOGICAL-c401t-8d22762ab191fcfe6d00aff61369403e205e7df7eaf661c51baa42a1b5d966a00
addsrcrecordideNp9kc2KFDEUhQtRsB19ABdCwM24qDapn6Rq2TTjDzS6GcFdSKVuqm-bTtokPcP4LD6sqSkRmcWQRcjlfOfe3FMUrxldM0rF-8gYo01JGS-rru_L_kmxYq2oy5bW_GmxorSuSir678-LFzEe6PxmfFX83sToNaqE3hFvyO0eExBt_Q0Ecnkd0HiL5yMJcAIXyW79jtxi2pOwx19-QDUz8WZN0qJEMoD1bkI3keRJ2gcAMoHzR9QknkAjRIKOKPtDWXRAokd7X_niQ7ZVbiRXKiay3aNTL4tnRtkIr_7eF8W3D1fX20_l7uvHz9vNrtQNZansxqoSvFID65nRBvhIqTKGs5r3Da2hoi2I0QhQhnOmWzYo1VSKDe3Yc64ovSguF99T8D_PEJM8YtRgrXLgz1GyrhJdx-tmlr59ID34c3B5ulnVNH0OQ2TVelFNyoJEZ3wKSuczQl6Ed2Aw1zeNoIJ1LZtt2QLo4GMMYOQp4FGFO8monAOWS8AyByzngGWfGfGA0Zjug8zN0D5KVgsZcxc3QfjvE49AbxboEJMP_-ZrmnnNdUv_AB8gxIk
sourcetypeAggregation Database
isCDItrue
recordtypearticle
pqid1824490077
display
typearticle
titleAssociation of white clover (Trifolium repens L.) with rhizobia of sv. trifolii belonging to three genomic species in alkaline soils in North and East China
creatorZhang, Jun Jie ; Jing, Xiao Yan ; de Lajudie, Philippe ; Ma, Chuang ; He, Pei Xin ; Singh, Raghvendra Pratap ; Chen, Wen Feng ; Wang, En Tao
creatorcontribZhang, Jun Jie ; Jing, Xiao Yan ; de Lajudie, Philippe ; Ma, Chuang ; He, Pei Xin ; Singh, Raghvendra Pratap ; Chen, Wen Feng ; Wang, En Tao
descriptionAims Rhizobia associated with white clover (Trifolium repens) grown in alkaline soils of China have never been investigated. This is the first survey to report of their genetic and biogeographical diversity. Methods Nodule bacteria were isolated from white clover grown in alkaline soils (pH 8.18–8.99) in North and East China and were characterized by multilocus sequence analysis (MLSA) of the housekeeping genes (atpD, recA, and glnII), and phylogenies of 16S rRNA gene and symbiotic genes nodC and nifH. The biogeographic distribution of rhizobial species was analyzed in relation to the soil factors. Results A total of 83 new strains could be affiliated to Rhizobium that shared 100 % sequence similarity of 16S rRNA gene with R. leguminosarum, R. acidisoli, R. anhuiense, R. indigoferae, R. sophorae, and R. laguerreae. Three genospecies were further distinguished based on the housekeeping gene analysis among these new strains: R. anhuiense, R. leguminosarum, and a hypothetical novel Rhizobium genospecies. Highly conserved symbiotic genes corresponding to those of symbiovar trifolii in R. leguminosarum were observed among all the new strains. Unique rhizobial communities associated with white clover were detected in the tested alkaline soils, and soil characteristics such as pH and nutrient levels were estimated as the determinant factors. Conclusions White clover established symbiosis with three Rhizobium genospecies harboring similar symbiotic genes in alkaline soils in China. Biogeographic pattern exists in clover rhizobia that was determined by the soil pH and nutrient levels.
identifier
0ISSN: 0032-079X
1EISSN: 1573-5036
2DOI: 10.1007/s11104-016-2899-9
languageeng
publisherCham: Springer
subjectAlkaline soils ; Bacteria ; Biodiversity ; Biomedical and Life Sciences ; Clover ; Ecology ; Flowers & plants ; Genes ; Genetic aspects ; Genomics ; Health aspects ; Life Sciences ; Phylogenetics ; Plant Physiology ; Plant Sciences ; Plant-soil relationships ; Regular Article ; Rhizobium ; rRNA genes ; Soil organic matter ; Soil samples ; Soil Science & Conservation ; Soils ; Symbiosis ; Trifolium repens
ispartofPlant and soil, 2016, Vol.407 (1/2), p.417-427
rights
0Springer Science+Business Media 2016
1Springer International Publishing Switzerland 2016
2COPYRIGHT 2016 Springer
lds50peer_reviewed
citedbyFETCH-LOGICAL-c401t-8d22762ab191fcfe6d00aff61369403e205e7df7eaf661c51baa42a1b5d966a00
citesFETCH-LOGICAL-c401t-8d22762ab191fcfe6d00aff61369403e205e7df7eaf661c51baa42a1b5d966a00
links
openurl$$Topenurl_article
thumbnail$$Usyndetics_thumb_exl
search
creatorcontrib
0Zhang, Jun Jie
1Jing, Xiao Yan
2de Lajudie, Philippe
3Ma, Chuang
4He, Pei Xin
5Singh, Raghvendra Pratap
6Chen, Wen Feng
7Wang, En Tao
title
0Association of white clover (Trifolium repens L.) with rhizobia of sv. trifolii belonging to three genomic species in alkaline soils in North and East China
1Plant and soil
addtitlePlant Soil
descriptionAims Rhizobia associated with white clover (Trifolium repens) grown in alkaline soils of China have never been investigated. This is the first survey to report of their genetic and biogeographical diversity. Methods Nodule bacteria were isolated from white clover grown in alkaline soils (pH 8.18–8.99) in North and East China and were characterized by multilocus sequence analysis (MLSA) of the housekeeping genes (atpD, recA, and glnII), and phylogenies of 16S rRNA gene and symbiotic genes nodC and nifH. The biogeographic distribution of rhizobial species was analyzed in relation to the soil factors. Results A total of 83 new strains could be affiliated to Rhizobium that shared 100 % sequence similarity of 16S rRNA gene with R. leguminosarum, R. acidisoli, R. anhuiense, R. indigoferae, R. sophorae, and R. laguerreae. Three genospecies were further distinguished based on the housekeeping gene analysis among these new strains: R. anhuiense, R. leguminosarum, and a hypothetical novel Rhizobium genospecies. Highly conserved symbiotic genes corresponding to those of symbiovar trifolii in R. leguminosarum were observed among all the new strains. Unique rhizobial communities associated with white clover were detected in the tested alkaline soils, and soil characteristics such as pH and nutrient levels were estimated as the determinant factors. Conclusions White clover established symbiosis with three Rhizobium genospecies harboring similar symbiotic genes in alkaline soils in China. Biogeographic pattern exists in clover rhizobia that was determined by the soil pH and nutrient levels.
subject
0Alkaline soils
1Bacteria
2Biodiversity
3Biomedical and Life Sciences
4Clover
5Ecology
6Flowers & plants
7Genes
8Genetic aspects
9Genomics
10Health aspects
11Life Sciences
12Phylogenetics
13Plant Physiology
14Plant Sciences
15Plant-soil relationships
16Regular Article
17Rhizobium
18rRNA genes
19Soil organic matter
20Soil samples
21Soil Science & Conservation
22Soils
23Symbiosis
24Trifolium repens
issn
00032-079X
11573-5036
fulltextfalse
rsrctypearticle
creationdate2016
recordtypearticle
recordideNp9kc2KFDEUhQtRsB19ABdCwM24qDapn6Rq2TTjDzS6GcFdSKVuqm-bTtokPcP4LD6sqSkRmcWQRcjlfOfe3FMUrxldM0rF-8gYo01JGS-rru_L_kmxYq2oy5bW_GmxorSuSir678-LFzEe6PxmfFX83sToNaqE3hFvyO0eExBt_Q0Ecnkd0HiL5yMJcAIXyW79jtxi2pOwx19-QDUz8WZN0qJEMoD1bkI3keRJ2gcAMoHzR9QknkAjRIKOKPtDWXRAokd7X_niQ7ZVbiRXKiay3aNTL4tnRtkIr_7eF8W3D1fX20_l7uvHz9vNrtQNZansxqoSvFID65nRBvhIqTKGs5r3Da2hoi2I0QhQhnOmWzYo1VSKDe3Yc64ovSguF99T8D_PEJM8YtRgrXLgz1GyrhJdx-tmlr59ID34c3B5ulnVNH0OQ2TVelFNyoJEZ3wKSuczQl6Ed2Aw1zeNoIJ1LZtt2QLo4GMMYOQp4FGFO8monAOWS8AyByzngGWfGfGA0Zjug8zN0D5KVgsZcxc3QfjvE49AbxboEJMP_-ZrmnnNdUv_AB8gxIk
startdate20161001
enddate20161001
creator
0Zhang, Jun Jie
1Jing, Xiao Yan
2de Lajudie, Philippe
3Ma, Chuang
4He, Pei Xin
5Singh, Raghvendra Pratap
6Chen, Wen Feng
7Wang, En Tao
general
0Springer
1Springer International Publishing
2Springer Nature B.V
scope
0AAYXX
1CITATION
23V.
37SN
47ST
57T7
67X2
788A
88FD
98FE
108FH
118FK
12ABUWG
13ATCPS
14AZQEC
15BBNVY
16BENPR
17BHPHI
18C1K
19DWQXO
20FR3
21GNUQQ
22HCIFZ
23LK8
24M0K
25M7P
26P64
27PQEST
28PQQKQ
29PQUKI
30PRINS
31RC3
32SOI
337QL
sort
creationdate20161001
titleAssociation of white clover (Trifolium repens L.) with rhizobia of sv. trifolii belonging to three genomic species in alkaline soils in North and East China
authorZhang, Jun Jie ; Jing, Xiao Yan ; de Lajudie, Philippe ; Ma, Chuang ; He, Pei Xin ; Singh, Raghvendra Pratap ; Chen, Wen Feng ; Wang, En Tao
facets
frbrtype5
frbrgroupidcdi_FETCH-LOGICAL-c401t-8d22762ab191fcfe6d00aff61369403e205e7df7eaf661c51baa42a1b5d966a00
rsrctypearticles
prefilterarticles
languageeng
creationdate2016
topic
0Alkaline soils
1Bacteria
2Biodiversity
3Biomedical and Life Sciences
4Clover
5Ecology
6Flowers & plants
7Genes
8Genetic aspects
9Genomics
10Health aspects
11Life Sciences
12Phylogenetics
13Plant Physiology
14Plant Sciences
15Plant-soil relationships
16Regular Article
17Rhizobium
18rRNA genes
19Soil organic matter
20Soil samples
21Soil Science & Conservation
22Soils
23Symbiosis
24Trifolium repens
toplevelpeer_reviewed
creatorcontrib
0Zhang, Jun Jie
1Jing, Xiao Yan
2de Lajudie, Philippe
3Ma, Chuang
4He, Pei Xin
5Singh, Raghvendra Pratap
6Chen, Wen Feng
7Wang, En Tao
collection
0CrossRef
1ProQuest Central (Corporate)
2Ecology Abstracts
3Environment Abstracts
4Industrial and Applied Microbiology Abstracts (Microbiology A)
5Agricultural Science Collection
6Biology Database (Alumni Edition)
7Technology Research Database
8ProQuest SciTech Collection
9ProQuest Natural Science Collection
10ProQuest Central (Alumni) (purchase pre-March 2016)
11ProQuest Central (Alumni Edition)
12Agricultural & Environmental Science Collection
13ProQuest Central Essentials
14Biological Science Collection
15ProQuest Central
16Natural Science Collection
17Environmental Sciences and Pollution Management
18ProQuest Central Korea
19Engineering Research Database
20ProQuest Central Student
21SciTech Premium Collection
22ProQuest Biological Science Collection
23Agricultural Science Database
24Biological Science Database
25Biotechnology and BioEngineering Abstracts
26ProQuest One Academic Eastern Edition
27ProQuest One Academic
28ProQuest One Academic UKI Edition
29ProQuest Central China
30Genetics Abstracts
31Environment Abstracts
32Bacteriology Abstracts (Microbiology B)
jtitlePlant and soil
delivery
delcategoryRemote Search Resource
fulltextno_fulltext
addata
au
0Zhang, Jun Jie
1Jing, Xiao Yan
2de Lajudie, Philippe
3Ma, Chuang
4He, Pei Xin
5Singh, Raghvendra Pratap
6Chen, Wen Feng
7Wang, En Tao
formatjournal
genrearticle
ristypeJOUR
atitleAssociation of white clover (Trifolium repens L.) with rhizobia of sv. trifolii belonging to three genomic species in alkaline soils in North and East China
jtitlePlant and soil
stitlePlant Soil
date2016-10-01
risdate2016
volume407
issue1/2
spage417
epage427
pages417-427
issn0032-079X
eissn1573-5036
abstractAims Rhizobia associated with white clover (Trifolium repens) grown in alkaline soils of China have never been investigated. This is the first survey to report of their genetic and biogeographical diversity. Methods Nodule bacteria were isolated from white clover grown in alkaline soils (pH 8.18–8.99) in North and East China and were characterized by multilocus sequence analysis (MLSA) of the housekeeping genes (atpD, recA, and glnII), and phylogenies of 16S rRNA gene and symbiotic genes nodC and nifH. The biogeographic distribution of rhizobial species was analyzed in relation to the soil factors. Results A total of 83 new strains could be affiliated to Rhizobium that shared 100 % sequence similarity of 16S rRNA gene with R. leguminosarum, R. acidisoli, R. anhuiense, R. indigoferae, R. sophorae, and R. laguerreae. Three genospecies were further distinguished based on the housekeeping gene analysis among these new strains: R. anhuiense, R. leguminosarum, and a hypothetical novel Rhizobium genospecies. Highly conserved symbiotic genes corresponding to those of symbiovar trifolii in R. leguminosarum were observed among all the new strains. Unique rhizobial communities associated with white clover were detected in the tested alkaline soils, and soil characteristics such as pH and nutrient levels were estimated as the determinant factors. Conclusions White clover established symbiosis with three Rhizobium genospecies harboring similar symbiotic genes in alkaline soils in China. Biogeographic pattern exists in clover rhizobia that was determined by the soil pH and nutrient levels.
copCham
pubSpringer
doi10.1007/s11104-016-2899-9