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Genome-wide investigation of the MADS gene family and dehulling genes in tartary buckwheat (Fagopyrum tataricum)

Main conclusion Genome-wide identification, expression analysis and potential functional characterization of previously uncharacterized MADS family of tartary buckwheat, emphasized the importance of this gene family in plant growth and development. The MADS transcription factor is a key regulatory f... Full description

Journal Title: Planta 2019-01-07, Vol.249 (5), p.1301-1318
Main Author: Liu, Moyang
Other Authors: Fu, Qiankun , Ma, Zhaotang , Sun, Wenjun , Huang, Li , Wu, Qi , Tang, Zizhong , Bu, Tongliang , Li, Chenglei , Chen, Hui
Format: Electronic Article Electronic Article
Language: English
Subjects:
Publisher: Berlin/Heidelberg: Springer Berlin Heidelberg
ID: ISSN: 0032-0935
Link: https://www.ncbi.nlm.nih.gov/pubmed/30617544
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recordid: cdi_proquest_miscellaneous_2165097995
title: Genome-wide investigation of the MADS gene family and dehulling genes in tartary buckwheat (Fagopyrum tataricum)
format: Article
creator:
  • Liu, Moyang
  • Fu, Qiankun
  • Ma, Zhaotang
  • Sun, Wenjun
  • Huang, Li
  • Wu, Qi
  • Tang, Zizhong
  • Bu, Tongliang
  • Li, Chenglei
  • Chen, Hui
subjects:
  • Agriculture
  • Anopheles
  • Biomedical and Life Sciences
  • Buckwheat
  • Crack propagation
  • Developmental stages
  • Ecology
  • Fagopyrum - genetics
  • Fagopyrum - metabolism
  • Fagopyrum tataricum
  • Forestry
  • Fruit - genetics
  • Fruit - metabolism
  • Fruits
  • Gene expression
  • Gene Expression Regulation, Plant
  • Gene mapping
  • Genes
  • Genetic research
  • Genetic transcription
  • Genomes
  • Genomics
  • Investigations
  • Life Sciences
  • Mapping
  • Nucleotide sequence
  • Original Article
  • Peptide mapping
  • Phylogenetics
  • Phylogeny
  • Plant genetics
  • Plant growth
  • Plant Proteins - classification
  • Plant Proteins - genetics
  • Plant Proteins - metabolism
  • Plant Sciences
  • Plant tissues
  • Proteins
  • Replication
  • Transcription factors
ispartof: Planta, 2019-01-07, Vol.249 (5), p.1301-1318
description: Main conclusion Genome-wide identification, expression analysis and potential functional characterization of previously uncharacterized MADS family of tartary buckwheat, emphasized the importance of this gene family in plant growth and development. The MADS transcription factor is a key regulatory factor in the development of most plants. The MADS gene in plants controls all aspects of tissue and organ growth and reproduction and can be used to regulate plant seed cracking. However, there has been little research on the MADS genes of tartary buckwheat ( Fagopyrum tataricum ), which is an important edible and medicinal crop. The recently published whole genome sequence of tartary buckwheat allows us to study the tissue and expression profiles of the MADS gene in tartary buckwheat at a genome-wide level. In this study, 65 MADS genes of tartary buckwheat were identified and renamed according to the chromosomal distribution of the FtMADS genes. Here, we provide a complete overview of the gene structure, gene expression, genomic mapping, protein motif organization, and phylogenetic relationships of each member of the gene family. According to the phylogenetic relationship of MADS genes, the transcription factor family was divided into two subfamilies, the M subfamily (28 genes) and the MIKC subfamily (37 genes). The results showed that the FtMADS genes belonged to related sister pairs and the chromosomal map showed that the replication of FtMADS s was related to the replication of chromosome blocks. In different tissues and at different fruit development stages, the FtMADS genes obtained by real-time quantitative PCR (RT-qPCR) showed obvious expression patterns. A comprehensive analysis of the MADS genes in tartary buckwheat was conducted. Through systematic analysis, the potential genes that may regulate the growth and development of tartary buckwheat and the genes that may regulate the easy dehulling of tartary buckwheat fruit were screened, which laid a solid foundation for improving the quality of tartary buckwheat.
language: eng
source:
identifier: ISSN: 0032-0935
fulltext: no_fulltext
issn:
  • 0032-0935
  • 1432-2048
url: Link


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titleGenome-wide investigation of the MADS gene family and dehulling genes in tartary buckwheat (Fagopyrum tataricum)
creatorLiu, Moyang ; Fu, Qiankun ; Ma, Zhaotang ; Sun, Wenjun ; Huang, Li ; Wu, Qi ; Tang, Zizhong ; Bu, Tongliang ; Li, Chenglei ; Chen, Hui
creatorcontribLiu, Moyang ; Fu, Qiankun ; Ma, Zhaotang ; Sun, Wenjun ; Huang, Li ; Wu, Qi ; Tang, Zizhong ; Bu, Tongliang ; Li, Chenglei ; Chen, Hui
descriptionMain conclusion Genome-wide identification, expression analysis and potential functional characterization of previously uncharacterized MADS family of tartary buckwheat, emphasized the importance of this gene family in plant growth and development. The MADS transcription factor is a key regulatory factor in the development of most plants. The MADS gene in plants controls all aspects of tissue and organ growth and reproduction and can be used to regulate plant seed cracking. However, there has been little research on the MADS genes of tartary buckwheat ( Fagopyrum tataricum ), which is an important edible and medicinal crop. The recently published whole genome sequence of tartary buckwheat allows us to study the tissue and expression profiles of the MADS gene in tartary buckwheat at a genome-wide level. In this study, 65 MADS genes of tartary buckwheat were identified and renamed according to the chromosomal distribution of the FtMADS genes. Here, we provide a complete overview of the gene structure, gene expression, genomic mapping, protein motif organization, and phylogenetic relationships of each member of the gene family. According to the phylogenetic relationship of MADS genes, the transcription factor family was divided into two subfamilies, the M subfamily (28 genes) and the MIKC subfamily (37 genes). The results showed that the FtMADS genes belonged to related sister pairs and the chromosomal map showed that the replication of FtMADS s was related to the replication of chromosome blocks. In different tissues and at different fruit development stages, the FtMADS genes obtained by real-time quantitative PCR (RT-qPCR) showed obvious expression patterns. A comprehensive analysis of the MADS genes in tartary buckwheat was conducted. Through systematic analysis, the potential genes that may regulate the growth and development of tartary buckwheat and the genes that may regulate the easy dehulling of tartary buckwheat fruit were screened, which laid a solid foundation for improving the quality of tartary buckwheat.
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subjectAgriculture ; Anopheles ; Biomedical and Life Sciences ; Buckwheat ; Crack propagation ; Developmental stages ; Ecology ; Fagopyrum - genetics ; Fagopyrum - metabolism ; Fagopyrum tataricum ; Forestry ; Fruit - genetics ; Fruit - metabolism ; Fruits ; Gene expression ; Gene Expression Regulation, Plant ; Gene mapping ; Genes ; Genetic research ; Genetic transcription ; Genomes ; Genomics ; Investigations ; Life Sciences ; Mapping ; Nucleotide sequence ; Original Article ; Peptide mapping ; Phylogenetics ; Phylogeny ; Plant genetics ; Plant growth ; Plant Proteins - classification ; Plant Proteins - genetics ; Plant Proteins - metabolism ; Plant Sciences ; Plant tissues ; Proteins ; Replication ; Transcription factors
ispartofPlanta, 2019-01-07, Vol.249 (5), p.1301-1318
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9Chen, Hui
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descriptionMain conclusion Genome-wide identification, expression analysis and potential functional characterization of previously uncharacterized MADS family of tartary buckwheat, emphasized the importance of this gene family in plant growth and development. The MADS transcription factor is a key regulatory factor in the development of most plants. The MADS gene in plants controls all aspects of tissue and organ growth and reproduction and can be used to regulate plant seed cracking. However, there has been little research on the MADS genes of tartary buckwheat ( Fagopyrum tataricum ), which is an important edible and medicinal crop. The recently published whole genome sequence of tartary buckwheat allows us to study the tissue and expression profiles of the MADS gene in tartary buckwheat at a genome-wide level. In this study, 65 MADS genes of tartary buckwheat were identified and renamed according to the chromosomal distribution of the FtMADS genes. Here, we provide a complete overview of the gene structure, gene expression, genomic mapping, protein motif organization, and phylogenetic relationships of each member of the gene family. According to the phylogenetic relationship of MADS genes, the transcription factor family was divided into two subfamilies, the M subfamily (28 genes) and the MIKC subfamily (37 genes). The results showed that the FtMADS genes belonged to related sister pairs and the chromosomal map showed that the replication of FtMADS s was related to the replication of chromosome blocks. In different tissues and at different fruit development stages, the FtMADS genes obtained by real-time quantitative PCR (RT-qPCR) showed obvious expression patterns. A comprehensive analysis of the MADS genes in tartary buckwheat was conducted. Through systematic analysis, the potential genes that may regulate the growth and development of tartary buckwheat and the genes that may regulate the easy dehulling of tartary buckwheat fruit were screened, which laid a solid foundation for improving the quality of tartary buckwheat.
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1Anopheles
2Biomedical and Life Sciences
3Buckwheat
4Crack propagation
5Developmental stages
6Ecology
7Fagopyrum - genetics
8Fagopyrum - metabolism
9Fagopyrum tataricum
10Forestry
11Fruit - genetics
12Fruit - metabolism
13Fruits
14Gene expression
15Gene Expression Regulation, Plant
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17Genes
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19Genetic transcription
20Genomes
21Genomics
22Investigations
23Life Sciences
24Mapping
25Nucleotide sequence
26Original Article
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28Phylogenetics
29Phylogeny
30Plant genetics
31Plant growth
32Plant Proteins - classification
33Plant Proteins - genetics
34Plant Proteins - metabolism
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37Proteins
38Replication
39Transcription factors
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titleGenome-wide investigation of the MADS gene family and dehulling genes in tartary buckwheat (Fagopyrum tataricum)
authorLiu, Moyang ; Fu, Qiankun ; Ma, Zhaotang ; Sun, Wenjun ; Huang, Li ; Wu, Qi ; Tang, Zizhong ; Bu, Tongliang ; Li, Chenglei ; Chen, Hui
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abstractMain conclusion Genome-wide identification, expression analysis and potential functional characterization of previously uncharacterized MADS family of tartary buckwheat, emphasized the importance of this gene family in plant growth and development. The MADS transcription factor is a key regulatory factor in the development of most plants. The MADS gene in plants controls all aspects of tissue and organ growth and reproduction and can be used to regulate plant seed cracking. However, there has been little research on the MADS genes of tartary buckwheat ( Fagopyrum tataricum ), which is an important edible and medicinal crop. The recently published whole genome sequence of tartary buckwheat allows us to study the tissue and expression profiles of the MADS gene in tartary buckwheat at a genome-wide level. In this study, 65 MADS genes of tartary buckwheat were identified and renamed according to the chromosomal distribution of the FtMADS genes. Here, we provide a complete overview of the gene structure, gene expression, genomic mapping, protein motif organization, and phylogenetic relationships of each member of the gene family. According to the phylogenetic relationship of MADS genes, the transcription factor family was divided into two subfamilies, the M subfamily (28 genes) and the MIKC subfamily (37 genes). The results showed that the FtMADS genes belonged to related sister pairs and the chromosomal map showed that the replication of FtMADS s was related to the replication of chromosome blocks. In different tissues and at different fruit development stages, the FtMADS genes obtained by real-time quantitative PCR (RT-qPCR) showed obvious expression patterns. A comprehensive analysis of the MADS genes in tartary buckwheat was conducted. Through systematic analysis, the potential genes that may regulate the growth and development of tartary buckwheat and the genes that may regulate the easy dehulling of tartary buckwheat fruit were screened, which laid a solid foundation for improving the quality of tartary buckwheat.
copBerlin/Heidelberg
pubSpringer Berlin Heidelberg
pmid30617544
doi10.1007/s00425-019-03089-3
orcididhttps://orcid.org/0000-0001-9185-1764