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Succession of bacterial community composition over two consecutive years in two aquatic systems: a natural lake and a lake-reservoir

Abstract The succession in bacterial community composition was studied over two years in the epilimnion and hypolimnion of two freshwater systems: a natural lake (Pavin Lake) and a lake-reservoir (Sep Reservoir). The bacterial community composition was determined by cloning-sequencing of 16S rRNA an... Full description

Journal Title: FEMS microbiology ecology 2006-01-01, Vol.55 (1), p.79-97
Main Author: Boucher, Delphine
Other Authors: Jardillier, Ludwig , Debroas, Didier
Format: Electronic Article Electronic Article
Language: English
Subjects:
Quelle: Alma/SFX Local Collection
Publisher: Oxford, UK: Blackwell Publishing Ltd
ID: ISSN: 0168-6496
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recordid: cdi_proquest_miscellaneous_70669513
title: Succession of bacterial community composition over two consecutive years in two aquatic systems: a natural lake and a lake-reservoir
format: Article
creator:
  • Boucher, Delphine
  • Jardillier, Ludwig
  • Debroas, Didier
subjects:
  • 16S rRNA clone library
  • Acinetobacter - classification
  • Acinetobacter - genetics
  • Acinetobacter - isolation & purification
  • Animal, plant and microbial ecology
  • Aquatic environment
  • Bacteria
  • Bacteria - classification
  • Bacteria - genetics
  • Bacteria - isolation & purification
  • bacterial community composition
  • Bacteriology
  • Betaproteobacteria - classification
  • Betaproteobacteria - genetics
  • Betaproteobacteria - isolation & purification
  • Biological and medical sciences
  • Cloning
  • Communities
  • Community composition
  • Composition
  • Ecological succession
  • Ecosystem
  • Epilimnion
  • France
  • Fresh Water - microbiology
  • Freshwater lakes
  • Fundamental and applied biological sciences. Psychology
  • Hydrogeology
  • Hypolimnion
  • Lakes
  • Microbial ecology
  • Microbiology
  • Miscellaneous
  • Mortality factors
  • Nutrient availability
  • Phylogeny
  • Polymerase Chain Reaction
  • Polymorphism
  • Polymorphism, Restriction Fragment Length
  • Reservoirs
  • Restriction fragment length polymorphism
  • RNA, Bacterial - genetics
  • RNA, Ribosomal, 16S - genetics
  • rRNA 16S
  • spatio‐temporal succession
  • Species Specificity
  • Temporal variations
  • terminal restriction fragment length polymorphism
  • Time Factors
  • Various environments (extraatmospheric space, air, water)
  • Water Microbiology
ispartof: FEMS microbiology ecology, 2006-01-01, Vol.55 (1), p.79-97
description: Abstract The succession in bacterial community composition was studied over two years in the epilimnion and hypolimnion of two freshwater systems: a natural lake (Pavin Lake) and a lake-reservoir (Sep Reservoir). The bacterial community composition was determined by cloning-sequencing of 16S rRNA and by terminal restriction fragment length polymorphism. Despite large hydrogeological differences, in the Sep Reservoir and Pavin Lake the dominant bacteria were from the same taxonomic divisions, particularly Actinobacteria and Betaproteobacteria. In both ecosystems, these major bacterial divisions showed temporal fluctuations that were much less marked than those occurring at a finer phylogenetic scale. Nutrient availability and mortality factors, the nature of which differed from one lake to another, covaried with the temporal variations in the bacterial community composition at all sampling depths, whereas factors related to seasonal forces (temperature and outflow for Sep Reservoir) seemed to account only for the variation of the hypolimnion bacterial community composition. No seasonal reproducibility in temporal evolution of bacterial community from one year to the next was observed.
language: eng
source: Alma/SFX Local Collection
identifier: ISSN: 0168-6496
fulltext: fulltext
issn:
  • 0168-6496
  • 1574-6941
url: Link


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titleSuccession of bacterial community composition over two consecutive years in two aquatic systems: a natural lake and a lake-reservoir
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descriptionAbstract The succession in bacterial community composition was studied over two years in the epilimnion and hypolimnion of two freshwater systems: a natural lake (Pavin Lake) and a lake-reservoir (Sep Reservoir). The bacterial community composition was determined by cloning-sequencing of 16S rRNA and by terminal restriction fragment length polymorphism. Despite large hydrogeological differences, in the Sep Reservoir and Pavin Lake the dominant bacteria were from the same taxonomic divisions, particularly Actinobacteria and Betaproteobacteria. In both ecosystems, these major bacterial divisions showed temporal fluctuations that were much less marked than those occurring at a finer phylogenetic scale. Nutrient availability and mortality factors, the nature of which differed from one lake to another, covaried with the temporal variations in the bacterial community composition at all sampling depths, whereas factors related to seasonal forces (temperature and outflow for Sep Reservoir) seemed to account only for the variation of the hypolimnion bacterial community composition. No seasonal reproducibility in temporal evolution of bacterial community from one year to the next was observed.
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languageeng
publisherOxford, UK: Blackwell Publishing Ltd
subject16S rRNA clone library ; Acinetobacter - classification ; Acinetobacter - genetics ; Acinetobacter - isolation & purification ; Animal, plant and microbial ecology ; Aquatic environment ; Bacteria ; Bacteria - classification ; Bacteria - genetics ; Bacteria - isolation & purification ; bacterial community composition ; Bacteriology ; Betaproteobacteria - classification ; Betaproteobacteria - genetics ; Betaproteobacteria - isolation & purification ; Biological and medical sciences ; Cloning ; Communities ; Community composition ; Composition ; Ecological succession ; Ecosystem ; Epilimnion ; France ; Fresh Water - microbiology ; Freshwater lakes ; Fundamental and applied biological sciences. Psychology ; Hydrogeology ; Hypolimnion ; Lakes ; Microbial ecology ; Microbiology ; Miscellaneous ; Mortality factors ; Nutrient availability ; Phylogeny ; Polymerase Chain Reaction ; Polymorphism ; Polymorphism, Restriction Fragment Length ; Reservoirs ; Restriction fragment length polymorphism ; RNA, Bacterial - genetics ; RNA, Ribosomal, 16S - genetics ; rRNA 16S ; spatio‐temporal succession ; Species Specificity ; Temporal variations ; terminal restriction fragment length polymorphism ; Time Factors ; Various environments (extraatmospheric space, air, water) ; Water Microbiology
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descriptionAbstract The succession in bacterial community composition was studied over two years in the epilimnion and hypolimnion of two freshwater systems: a natural lake (Pavin Lake) and a lake-reservoir (Sep Reservoir). The bacterial community composition was determined by cloning-sequencing of 16S rRNA and by terminal restriction fragment length polymorphism. Despite large hydrogeological differences, in the Sep Reservoir and Pavin Lake the dominant bacteria were from the same taxonomic divisions, particularly Actinobacteria and Betaproteobacteria. In both ecosystems, these major bacterial divisions showed temporal fluctuations that were much less marked than those occurring at a finer phylogenetic scale. Nutrient availability and mortality factors, the nature of which differed from one lake to another, covaried with the temporal variations in the bacterial community composition at all sampling depths, whereas factors related to seasonal forces (temperature and outflow for Sep Reservoir) seemed to account only for the variation of the hypolimnion bacterial community composition. No seasonal reproducibility in temporal evolution of bacterial community from one year to the next was observed.
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016S rRNA clone library
1Acinetobacter - classification
2Acinetobacter - genetics
3Acinetobacter - isolation & purification
4Animal, plant and microbial ecology
5Aquatic environment
6Bacteria
7Bacteria - classification
8Bacteria - genetics
9Bacteria - isolation & purification
10bacterial community composition
11Bacteriology
12Betaproteobacteria - classification
13Betaproteobacteria - genetics
14Betaproteobacteria - isolation & purification
15Biological and medical sciences
16Cloning
17Communities
18Community composition
19Composition
20Ecological succession
21Ecosystem
22Epilimnion
23France
24Fresh Water - microbiology
25Freshwater lakes
26Fundamental and applied biological sciences. Psychology
27Hydrogeology
28Hypolimnion
29Lakes
30Microbial ecology
31Microbiology
32Miscellaneous
33Mortality factors
34Nutrient availability
35Phylogeny
36Polymerase Chain Reaction
37Polymorphism
38Polymorphism, Restriction Fragment Length
39Reservoirs
40Restriction fragment length polymorphism
41RNA, Bacterial - genetics
42RNA, Ribosomal, 16S - genetics
43rRNA 16S
44spatio‐temporal succession
45Species Specificity
46Temporal variations
47terminal restriction fragment length polymorphism
48Time Factors
49Various environments (extraatmospheric space, air, water)
50Water Microbiology
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016S rRNA clone library
1Acinetobacter - classification
2Acinetobacter - genetics
3Acinetobacter - isolation & purification
4Animal, plant and microbial ecology
5Aquatic environment
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7Bacteria - classification
8Bacteria - genetics
9Bacteria - isolation & purification
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12Betaproteobacteria - classification
13Betaproteobacteria - genetics
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atitleSuccession of bacterial community composition over two consecutive years in two aquatic systems: a natural lake and a lake-reservoir
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date2006-01-01
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volume55
issue1
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notesEditor: Riks Laanbroek
abstractAbstract The succession in bacterial community composition was studied over two years in the epilimnion and hypolimnion of two freshwater systems: a natural lake (Pavin Lake) and a lake-reservoir (Sep Reservoir). The bacterial community composition was determined by cloning-sequencing of 16S rRNA and by terminal restriction fragment length polymorphism. Despite large hydrogeological differences, in the Sep Reservoir and Pavin Lake the dominant bacteria were from the same taxonomic divisions, particularly Actinobacteria and Betaproteobacteria. In both ecosystems, these major bacterial divisions showed temporal fluctuations that were much less marked than those occurring at a finer phylogenetic scale. Nutrient availability and mortality factors, the nature of which differed from one lake to another, covaried with the temporal variations in the bacterial community composition at all sampling depths, whereas factors related to seasonal forces (temperature and outflow for Sep Reservoir) seemed to account only for the variation of the hypolimnion bacterial community composition. No seasonal reproducibility in temporal evolution of bacterial community from one year to the next was observed.
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