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Identification of New CRF51_01B in Singapore Using Full Genome Analysis of Three HIV Type 1 Isolates

A recent HIV-1 molecular epidemiology survey in Singapore identified a novel CRF01_AE/B recombinant form, which accounted for 13 (11.9%) of 109 patient samples. Peripheral blood mononuclear cell DNA from three of these 13 patients was used to generate near full length sequences to characterize the n... Full description

Journal Title: AIDS research and human retroviruses 2011, Vol.28 (ja), p.527-530
Main Author: Ng, Oon Tek
Other Authors: Eyzaguirre, Lindsay M , Carr, Jean K , Chew, Kuan Kiat , Lin, Li , Chua, Arlene , Leo, Yee Sin , Redd, Andrew D , Quinn, Thomas C , Laeyendecker, Oliver
Format: Electronic Article Electronic Article
Language: English
Subjects:
DNA
Quelle: Alma/SFX Local Collection
Publisher: New Rochelle, NY: Liebert
ID: ISSN: 0889-2229
Zum Text:
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recordid: cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_3332370
title: Identification of New CRF51_01B in Singapore Using Full Genome Analysis of Three HIV Type 1 Isolates
format: Article
creator:
  • Ng, Oon Tek
  • Eyzaguirre, Lindsay M
  • Carr, Jean K
  • Chew, Kuan Kiat
  • Lin, Li
  • Chua, Arlene
  • Leo, Yee Sin
  • Redd, Andrew D
  • Quinn, Thomas C
  • Laeyendecker, Oliver
subjects:
  • Adult
  • AIDS/HIV
  • Base Sequence
  • Biological and medical sciences
  • Breakpoints
  • Corticotropin-releasing hormone
  • Disease transmission
  • DNA
  • Epidemiology
  • Fundamental and applied biological sciences. Psychology
  • Genomes
  • Genotype
  • HIV Seropositivity - epidemiology
  • HIV Seropositivity - genetics
  • HIV-1 - genetics
  • HIV-1 - isolation & purification
  • Human immunodeficiency virus 1
  • Human viral diseases
  • Humans
  • Infectious diseases
  • Male
  • Medical sciences
  • Microbiology
  • Middle Aged
  • Miscellaneous
  • Molecular Sequence Data
  • Nucleotide sequence
  • Peripheral blood mononuclear cells
  • Phylogeny
  • Retrovirus
  • Sequence Notes
  • Singapore - epidemiology
  • Viral diseases
  • Virology
  • virus diseases
ispartof: AIDS research and human retroviruses, 2011, Vol.28 (ja), p.527-530
description: A recent HIV-1 molecular epidemiology survey in Singapore identified a novel CRF01_AE/B recombinant form, which accounted for 13 (11.9%) of 109 patient samples. Peripheral blood mononuclear cell DNA from three of these 13 patients was used to generate near full length sequences to characterize the novel CRF01_AE/B recombinant form. The three isolates had a recombinant structure composed of CRF01_AE and subtype B and shared identical breakpoints. As the three patients were not epidemiologically-linked, this recombinant form has been designated CRF51_01B. Identification of the novel recombinant forms indicates ongoing active HIV-1 transmission in Singapore.
language: eng
source: Alma/SFX Local Collection
identifier: ISSN: 0889-2229
fulltext: fulltext
issn:
  • 0889-2229
  • 1931-8405
url: Link


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creatorNg, Oon Tek ; Eyzaguirre, Lindsay M ; Carr, Jean K ; Chew, Kuan Kiat ; Lin, Li ; Chua, Arlene ; Leo, Yee Sin ; Redd, Andrew D ; Quinn, Thomas C ; Laeyendecker, Oliver
creatorcontribNg, Oon Tek ; Eyzaguirre, Lindsay M ; Carr, Jean K ; Chew, Kuan Kiat ; Lin, Li ; Chua, Arlene ; Leo, Yee Sin ; Redd, Andrew D ; Quinn, Thomas C ; Laeyendecker, Oliver
descriptionA recent HIV-1 molecular epidemiology survey in Singapore identified a novel CRF01_AE/B recombinant form, which accounted for 13 (11.9%) of 109 patient samples. Peripheral blood mononuclear cell DNA from three of these 13 patients was used to generate near full length sequences to characterize the novel CRF01_AE/B recombinant form. The three isolates had a recombinant structure composed of CRF01_AE and subtype B and shared identical breakpoints. As the three patients were not epidemiologically-linked, this recombinant form has been designated CRF51_01B. Identification of the novel recombinant forms indicates ongoing active HIV-1 transmission in Singapore.
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subjectAdult ; AIDS/HIV ; Base Sequence ; Biological and medical sciences ; Breakpoints ; Corticotropin-releasing hormone ; Disease transmission ; DNA ; Epidemiology ; Fundamental and applied biological sciences. Psychology ; Genomes ; Genotype ; HIV Seropositivity - epidemiology ; HIV Seropositivity - genetics ; HIV-1 - genetics ; HIV-1 - isolation & purification ; Human immunodeficiency virus 1 ; Human viral diseases ; Humans ; Infectious diseases ; Male ; Medical sciences ; Microbiology ; Middle Aged ; Miscellaneous ; Molecular Sequence Data ; Nucleotide sequence ; Peripheral blood mononuclear cells ; Phylogeny ; Retrovirus ; Sequence Notes ; Singapore - epidemiology ; Viral diseases ; Virology ; virus diseases
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descriptionA recent HIV-1 molecular epidemiology survey in Singapore identified a novel CRF01_AE/B recombinant form, which accounted for 13 (11.9%) of 109 patient samples. Peripheral blood mononuclear cell DNA from three of these 13 patients was used to generate near full length sequences to characterize the novel CRF01_AE/B recombinant form. The three isolates had a recombinant structure composed of CRF01_AE and subtype B and shared identical breakpoints. As the three patients were not epidemiologically-linked, this recombinant form has been designated CRF51_01B. Identification of the novel recombinant forms indicates ongoing active HIV-1 transmission in Singapore.
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17Human viral diseases
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abstractA recent HIV-1 molecular epidemiology survey in Singapore identified a novel CRF01_AE/B recombinant form, which accounted for 13 (11.9%) of 109 patient samples. Peripheral blood mononuclear cell DNA from three of these 13 patients was used to generate near full length sequences to characterize the novel CRF01_AE/B recombinant form. The three isolates had a recombinant structure composed of CRF01_AE and subtype B and shared identical breakpoints. As the three patients were not epidemiologically-linked, this recombinant form has been designated CRF51_01B. Identification of the novel recombinant forms indicates ongoing active HIV-1 transmission in Singapore.
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