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KBase: The United States Department of Energy Systems Biology Knowledgebase

Journal Title: Nature Biotechnology 2018-07-06, Vol.36 (7), p.566-569
Main Author: Arkin, Adam P
Other Authors: Cottingham, Robert W , Henry, Christopher S , Harris, Nomi L , Stevens, Rick L , Maslov, Sergei , Dehal, Paramvir , Ware, Doreen , Perez, Fernando , Canon, Shane , Sneddon, Michael W , Henderson, Matthew L , Riehl, William J , Murphy-Olson, Dan , Chan, Stephen Y , Kamimura, Roy T , Kumari, Sunita , Drake, Meghan M , Brettin, Thomas S , Glass, Elizabeth M , Chivian, Dylan , Gunter, Dan , Weston, David J , Allen, Benjamin H , Baumohl, Jason , Best, Aaron A , Bowen, Ben , Brenner, Steven E , Bun, Christopher C , Chandonia, John-Marc , Chia, Jer-Ming , Colasanti, Ric , Conrad, Neal , Davis, James J , Davison, Brian H , DeJongh, Matthew , Devoid, Scott , Dietrich, Emily , Dubchak, Inna , Edirisinghe, Janaka N , Fang, Gang , Faria, José P , Frybarger, Paul M , Gerlach, Wolfgang , Gerstein, Mark , Greiner, Annette , Gurtowski, James , Haun, Holly L , He, Fei , Jain, Rashmi , Joachimiak, Marcin P , Keegan, Kevin P , Kondo, Shinnosuke , Kumar, Vivek , Land, Miriam L , Meyer, Folker , Mills, Marissa , Novichkov, Pavel S , Oh, Taeyun , Olsen, Gary J , Olson, Robert , Parrello, Bruce , Pasternak, Shiran , Pearson, Erik , Poon, Sarah S , Price, Gavin A , Ramakrishnan, Srividya , Ranjan, Priya , Ronald, Pamela C , Schatz, Michael C , Seaver, Samuel M D , Shukla, Maulik , Sutormin, Roman A , Syed, Mustafa H , Thomason, James , Tintle, Nathan L , Wang, Daifeng , Xia, Fangfang , Yoo, Hyunseung , Yoo, Shinjae , Yu, Dantong
Format: Electronic Article Electronic Article
Language: English
Subjects:
Publisher: United States: Nature Publishing Group
ID: ISSN: 1087-0156
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title: KBase: The United States Department of Energy Systems Biology Knowledgebase
format: Article
creator:
  • Arkin, Adam P
  • Cottingham, Robert W
  • Henry, Christopher S
  • Harris, Nomi L
  • Stevens, Rick L
  • Maslov, Sergei
  • Dehal, Paramvir
  • Ware, Doreen
  • Perez, Fernando
  • Canon, Shane
  • Sneddon, Michael W
  • Henderson, Matthew L
  • Riehl, William J
  • Murphy-Olson, Dan
  • Chan, Stephen Y
  • Kamimura, Roy T
  • Kumari, Sunita
  • Drake, Meghan M
  • Brettin, Thomas S
  • Glass, Elizabeth M
  • Chivian, Dylan
  • Gunter, Dan
  • Weston, David J
  • Allen, Benjamin H
  • Baumohl, Jason
  • Best, Aaron A
  • Bowen, Ben
  • Brenner, Steven E
  • Bun, Christopher C
  • Chandonia, John-Marc
  • Chia, Jer-Ming
  • Colasanti, Ric
  • Conrad, Neal
  • Davis, James J
  • Davison, Brian H
  • DeJongh, Matthew
  • Devoid, Scott
  • Dietrich, Emily
  • Dubchak, Inna
  • Edirisinghe, Janaka N
  • Fang, Gang
  • Faria, José P
  • Frybarger, Paul M
  • Gerlach, Wolfgang
  • Gerstein, Mark
  • Greiner, Annette
  • Gurtowski, James
  • Haun, Holly L
  • He, Fei
  • Jain, Rashmi
  • Joachimiak, Marcin P
  • Keegan, Kevin P
  • Kondo, Shinnosuke
  • Kumar, Vivek
  • Land, Miriam L
  • Meyer, Folker
  • Mills, Marissa
  • Novichkov, Pavel S
  • Oh, Taeyun
  • Olsen, Gary J
  • Olson, Robert
  • Parrello, Bruce
  • Pasternak, Shiran
  • Pearson, Erik
  • Poon, Sarah S
  • Price, Gavin A
  • Ramakrishnan, Srividya
  • Ranjan, Priya
  • Ronald, Pamela C
  • Schatz, Michael C
  • Seaver, Samuel M D
  • Shukla, Maulik
  • Sutormin, Roman A
  • Syed, Mustafa H
  • Thomason, James
  • Tintle, Nathan L
  • Wang, Daifeng
  • Xia, Fangfang
  • Yoo, Hyunseung
  • Yoo, Shinjae
  • Yu, Dantong
subjects:
  • Article
  • BASIC BIOLOGICAL SCIENCES
  • Biology
  • Computational Biology
  • Computational Biology - methods
  • Computational platforms
  • Computational platforms and environments
  • Data integration
  • Data models
  • Database Management Systems
  • Database Management Systems - trends
  • Databases
  • Energy policy
  • environments
  • Genomes
  • Genomics
  • Government agencies
  • Humans
  • Knowledge Bases
  • Knowledge bases (artificial intelligence)
  • KNOWLEDGE MANAGEMENT AND PRESERVATION
  • MATHEMATICS AND COMPUTING
  • Metabolism
  • Metabolites
  • Narratives
  • Open source software
  • Reproducibility
  • Software
  • Systems Biology
  • Systems Biology - trends
  • Technology application
  • United States
  • Usage
  • User interface
ispartof: Nature Biotechnology, 2018-07-06, Vol.36 (7), p.566-569
description:
language: eng
source:
identifier: ISSN: 1087-0156
fulltext: no_fulltext
issn:
  • 1087-0156
  • 1546-1696
url: Link


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languageeng
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subjectArticle ; BASIC BIOLOGICAL SCIENCES ; Biology ; Computational Biology ; Computational Biology - methods ; Computational platforms ; Computational platforms and environments ; Data integration ; Data models ; Database Management Systems ; Database Management Systems - trends ; Databases ; Energy policy ; environments ; Genomes ; Genomics ; Government agencies ; Humans ; Knowledge Bases ; Knowledge bases (artificial intelligence) ; KNOWLEDGE MANAGEMENT AND PRESERVATION ; MATHEMATICS AND COMPUTING ; Metabolism ; Metabolites ; Narratives ; Open source software ; Reproducibility ; Software ; Systems Biology ; Systems Biology - trends ; Technology application ; United States ; Usage ; User interface
ispartofNature Biotechnology, 2018-07-06, Vol.36 (7), p.566-569
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79Yoo, Shinjae
80Yu, Dantong
81Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States)
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titleKBase: The United States Department of Energy Systems Biology Knowledgebase
authorArkin, Adam P ; Cottingham, Robert W ; Henry, Christopher S ; Harris, Nomi L ; Stevens, Rick L ; Maslov, Sergei ; Dehal, Paramvir ; Ware, Doreen ; Perez, Fernando ; Canon, Shane ; Sneddon, Michael W ; Henderson, Matthew L ; Riehl, William J ; Murphy-Olson, Dan ; Chan, Stephen Y ; Kamimura, Roy T ; Kumari, Sunita ; Drake, Meghan M ; Brettin, Thomas S ; Glass, Elizabeth M ; Chivian, Dylan ; Gunter, Dan ; Weston, David J ; Allen, Benjamin H ; Baumohl, Jason ; Best, Aaron A ; Bowen, Ben ; Brenner, Steven E ; Bun, Christopher C ; Chandonia, John-Marc ; Chia, Jer-Ming ; Colasanti, Ric ; Conrad, Neal ; Davis, James J ; Davison, Brian H ; DeJongh, Matthew ; Devoid, Scott ; Dietrich, Emily ; Dubchak, Inna ; Edirisinghe, Janaka N ; Fang, Gang ; Faria, José P ; Frybarger, Paul M ; Gerlach, Wolfgang ; Gerstein, Mark ; Greiner, Annette ; Gurtowski, James ; Haun, Holly L ; He, Fei ; Jain, Rashmi ; Joachimiak, Marcin P ; Keegan, Kevin P ; Kondo, Shinnosuke ; Kumar, Vivek ; Land, Miriam L ; Meyer, Folker ; Mills, Marissa ; Novichkov, Pavel S ; Oh, Taeyun ; Olsen, Gary J ; Olson, Robert ; Parrello, Bruce ; Pasternak, Shiran ; Pearson, Erik ; Poon, Sarah S ; Price, Gavin A ; Ramakrishnan, Srividya ; Ranjan, Priya ; Ronald, Pamela C ; Schatz, Michael C ; Seaver, Samuel M D ; Shukla, Maulik ; Sutormin, Roman A ; Syed, Mustafa H ; Thomason, James ; Tintle, Nathan L ; Wang, Daifeng ; Xia, Fangfang ; Yoo, Hyunseung ; Yoo, Shinjae ; Yu, Dantong
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2Biology
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5Computational platforms
6Computational platforms and environments
7Data integration
8Data models
9Database Management Systems
10Database Management Systems - trends
11Databases
12Energy policy
13environments
14Genomes
15Genomics
16Government agencies
17Humans
18Knowledge Bases
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21MATHEMATICS AND COMPUTING
22Metabolism
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24Narratives
25Open source software
26Reproducibility
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28Systems Biology
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0Arkin, Adam P
1Cottingham, Robert W
2Henry, Christopher S
3Harris, Nomi L
4Stevens, Rick L
5Maslov, Sergei
6Dehal, Paramvir
7Ware, Doreen
8Perez, Fernando
9Canon, Shane
10Sneddon, Michael W
11Henderson, Matthew L
12Riehl, William J
13Murphy-Olson, Dan
14Chan, Stephen Y
15Kamimura, Roy T
16Kumari, Sunita
17Drake, Meghan M
18Brettin, Thomas S
19Glass, Elizabeth M
20Chivian, Dylan
21Gunter, Dan
22Weston, David J
23Allen, Benjamin H
24Baumohl, Jason
25Best, Aaron A
26Bowen, Ben
27Brenner, Steven E
28Bun, Christopher C
29Chandonia, John-Marc
30Chia, Jer-Ming
31Colasanti, Ric
32Conrad, Neal
33Davis, James J
34Davison, Brian H
35DeJongh, Matthew
36Devoid, Scott
37Dietrich, Emily
38Dubchak, Inna
39Edirisinghe, Janaka N
40Fang, Gang
41Faria, José P
42Frybarger, Paul M
43Gerlach, Wolfgang
44Gerstein, Mark
45Greiner, Annette
46Gurtowski, James
47Haun, Holly L
48He, Fei
49Jain, Rashmi
50Joachimiak, Marcin P
51Keegan, Kevin P
52Kondo, Shinnosuke
53Kumar, Vivek
54Land, Miriam L
55Meyer, Folker
56Mills, Marissa
57Novichkov, Pavel S
58Oh, Taeyun
59Olsen, Gary J
60Olson, Robert
61Parrello, Bruce
62Pasternak, Shiran
63Pearson, Erik
64Poon, Sarah S
65Price, Gavin A
66Ramakrishnan, Srividya
67Ranjan, Priya
68Ronald, Pamela C
69Schatz, Michael C
70Seaver, Samuel M D
71Shukla, Maulik
72Sutormin, Roman A
73Syed, Mustafa H
74Thomason, James
75Tintle, Nathan L
76Wang, Daifeng
77Xia, Fangfang
78Yoo, Hyunseung
79Yoo, Shinjae
80Yu, Dantong
81Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States)
82Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
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0Medline
1MEDLINE
2MEDLINE (Ovid)
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4MEDLINE
5PubMed
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8Biotechnology Research Abstracts
9Calcium & Calcified Tissue Abstracts
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15ProQuest Central (purchase pre-March 2016)
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25Hospital Premium Collection (Alumni Edition)
26ProQuest Central (Alumni) (purchase pre-March 2016)
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30ProQuest Central Essentials
31Biological Science Collection
32ProQuest Central
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37Engineering Research Database
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39Health Research Premium Collection (Alumni)
40ProQuest Central Student
41Research Library Prep
42SciTech Premium Collection
43ProQuest Health & Medical Complete (Alumni)
44ProQuest Engineering Collection
45ProQuest Biological Science Collection
46Health & Medical Collection (Alumni Edition)
47Medical Database
48Research Library
49Science Database
50Biological Science Database
51Engineering Database
52Research Library (Corporate)
53Biotechnology and BioEngineering Abstracts
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56ProQuest One Academic
57ProQuest One Academic UKI Edition
58ProQuest Central China
59Engineering Collection
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61Genetics Abstracts
62MEDLINE - Academic
63OpenAIRE (Open Access)
64OpenAIRE
65OSTI.GOV - Hybrid
66OSTI.GOV
67PubMed Central (Full Participant titles)
jtitleNature Biotechnology
delivery
delcategoryRemote Search Resource
fulltextno_fulltext
addata
au
0Arkin, Adam P
1Cottingham, Robert W
2Henry, Christopher S
3Harris, Nomi L
4Stevens, Rick L
5Maslov, Sergei
6Dehal, Paramvir
7Ware, Doreen
8Perez, Fernando
9Canon, Shane
10Sneddon, Michael W
11Henderson, Matthew L
12Riehl, William J
13Murphy-Olson, Dan
14Chan, Stephen Y
15Kamimura, Roy T
16Kumari, Sunita
17Drake, Meghan M
18Brettin, Thomas S
19Glass, Elizabeth M
20Chivian, Dylan
21Gunter, Dan
22Weston, David J
23Allen, Benjamin H
24Baumohl, Jason
25Best, Aaron A
26Bowen, Ben
27Brenner, Steven E
28Bun, Christopher C
29Chandonia, John-Marc
30Chia, Jer-Ming
31Colasanti, Ric
32Conrad, Neal
33Davis, James J
34Davison, Brian H
35DeJongh, Matthew
36Devoid, Scott
37Dietrich, Emily
38Dubchak, Inna
39Edirisinghe, Janaka N
40Fang, Gang
41Faria, José P
42Frybarger, Paul M
43Gerlach, Wolfgang
44Gerstein, Mark
45Greiner, Annette
46Gurtowski, James
47Haun, Holly L
48He, Fei
49Jain, Rashmi
50Joachimiak, Marcin P
51Keegan, Kevin P
52Kondo, Shinnosuke
53Kumar, Vivek
54Land, Miriam L
55Meyer, Folker
56Mills, Marissa
57Novichkov, Pavel S
58Oh, Taeyun
59Olsen, Gary J
60Olson, Robert
61Parrello, Bruce
62Pasternak, Shiran
63Pearson, Erik
64Poon, Sarah S
65Price, Gavin A
66Ramakrishnan, Srividya
67Ranjan, Priya
68Ronald, Pamela C
69Schatz, Michael C
70Seaver, Samuel M D
71Shukla, Maulik
72Sutormin, Roman A
73Syed, Mustafa H
74Thomason, James
75Tintle, Nathan L
76Wang, Daifeng
77Xia, Fangfang
78Yoo, Hyunseung
79Yoo, Shinjae
80Yu, Dantong
aucorp
0Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States)
1Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
formatjournal
genrearticle
ristypeJOUR
atitleKBase: The United States Department of Energy Systems Biology Knowledgebase
jtitleNature Biotechnology
addtitleNat Biotechnol
date2018-07-06
risdate2018
volume36
issue7
spage566
epage569
pages566-569
issn1087-0156
eissn1546-1696
notes
0AC05-00OR22725; AC02-05CH11231; AC02-06CH11357; AC02-98CH10886
1USDOE Office of Science (SC), Biological and Environmental Research (BER)
copUnited States
pubNature Publishing Group
pmid29979655
doi10.1038/nbt.4163
tpages4
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