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KBase: The United States Department of Energy Systems Biology Knowledgebase

Journal Title: Nature Biotechnology 2018-07-06, Vol.36 (7), p.566-569
Main Author: Arkin, Adam P
Other Authors: Cottingham, Robert W , Henry, Christopher S , Harris, Nomi L , Stevens, Rick L , Maslov, Sergei , Dehal, Paramvir , Ware, Doreen , Perez, Fernando , Canon, Shane , Sneddon, Michael W , Henderson, Matthew L , Riehl, William J , Murphy-Olson, Dan , Chan, Stephen Y , Kamimura, Roy T , Kumari, Sunita , Drake, Meghan M , Brettin, Thomas S , Glass, Elizabeth M , Chivian, Dylan , Gunter, Dan , Weston, David J , Allen, Benjamin H , Baumohl, Jason , Best, Aaron A , Bowen, Ben , Brenner, Steven E , Bun, Christopher C , Chandonia, John-Marc , Chia, Jer-Ming , Colasanti, Ric , Conrad, Neal , Davis, James J , Davison, Brian H , DeJongh, Matthew , Devoid, Scott , Dietrich, Emily , Dubchak, Inna , Edirisinghe, Janaka N , Fang, Gang , Faria, José P , Frybarger, Paul M , Gerlach, Wolfgang , Gerstein, Mark , Greiner, Annette , Gurtowski, James , Haun, Holly L , He, Fei , Jain, Rashmi , Joachimiak, Marcin P , Keegan, Kevin P , Kondo, Shinnosuke , Kumar, Vivek , Land, Miriam L , Meyer, Folker , Mills, Marissa , Novichkov, Pavel S , Oh, Taeyun , Olsen, Gary J , Olson, Robert , Parrello, Bruce , Pasternak, Shiran , Pearson, Erik , Poon, Sarah S , Price, Gavin A , Ramakrishnan, Srividya , Ranjan, Priya , Ronald, Pamela C , Schatz, Michael C , Seaver, Samuel M D , Shukla, Maulik , Sutormin, Roman A , Syed, Mustafa H , Thomason, James , Tintle, Nathan L , Wang, Daifeng , Xia, Fangfang , Yoo, Hyunseung , Yoo, Shinjae , Yu, Dantong
Format: Electronic Article Electronic Article
Language: English
Subjects:
Article
BASIC BIOLOGICAL SCIENCES
Biology
Computational Biology
Computational Biology - methods
Computational platforms
Computational platforms and environments
Data integration
Data models
Database Management Systems
Database Management Systems - trends
Databases
Energy policy
environments
Genomes
Genomics
Government agencies
Humans
Knowledge Bases
Knowledge bases (artificial intelligence)
KNOWLEDGE MANAGEMENT AND PRESERVATION
MATHEMATICS AND COMPUTING
Metabolism
Metabolites
Narratives
Open source software
Reproducibility
Software
Systems Biology
Systems Biology - trends
Technology application
United States
Usage
User interface
Publisher: United States: Nature Publishing Group
ID: ISSN: 1087-0156
Zum Text:
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title: KBase: The United States Department of Energy Systems Biology Knowledgebase
format: Article
creator:
  • Arkin, Adam P
  • Cottingham, Robert W
  • Henry, Christopher S
  • Harris, Nomi L
  • Stevens, Rick L
  • Maslov, Sergei
  • Dehal, Paramvir
  • Ware, Doreen
  • Perez, Fernando
  • Canon, Shane
  • Sneddon, Michael W
  • Henderson, Matthew L
  • Riehl, William J
  • Murphy-Olson, Dan
  • Chan, Stephen Y
  • Kamimura, Roy T
  • Kumari, Sunita
  • Drake, Meghan M
  • Brettin, Thomas S
  • Glass, Elizabeth M
  • Chivian, Dylan
  • Gunter, Dan
  • Weston, David J
  • Allen, Benjamin H
  • Baumohl, Jason
  • Best, Aaron A
  • Bowen, Ben
  • Brenner, Steven E
  • Bun, Christopher C
  • Chandonia, John-Marc
  • Chia, Jer-Ming
  • Colasanti, Ric
  • Conrad, Neal
  • Davis, James J
  • Davison, Brian H
  • DeJongh, Matthew
  • Devoid, Scott
  • Dietrich, Emily
  • Dubchak, Inna
  • Edirisinghe, Janaka N
  • Fang, Gang
  • Faria, José P
  • Frybarger, Paul M
  • Gerlach, Wolfgang
  • Gerstein, Mark
  • Greiner, Annette
  • Gurtowski, James
  • Haun, Holly L
  • He, Fei
  • Jain, Rashmi
  • Joachimiak, Marcin P
  • Keegan, Kevin P
  • Kondo, Shinnosuke
  • Kumar, Vivek
  • Land, Miriam L
  • Meyer, Folker
  • Mills, Marissa
  • Novichkov, Pavel S
  • Oh, Taeyun
  • Olsen, Gary J
  • Olson, Robert
  • Parrello, Bruce
  • Pasternak, Shiran
  • Pearson, Erik
  • Poon, Sarah S
  • Price, Gavin A
  • Ramakrishnan, Srividya
  • Ranjan, Priya
  • Ronald, Pamela C
  • Schatz, Michael C
  • Seaver, Samuel M D
  • Shukla, Maulik
  • Sutormin, Roman A
  • Syed, Mustafa H
  • Thomason, James
  • Tintle, Nathan L
  • Wang, Daifeng
  • Xia, Fangfang
  • Yoo, Hyunseung
  • Yoo, Shinjae
  • Yu, Dantong
subjects:
  • Article
  • BASIC BIOLOGICAL SCIENCES
  • Biology
  • Computational Biology
  • Computational Biology - methods
  • Computational platforms
  • Computational platforms and environments
  • Data integration
  • Data models
  • Database Management Systems
  • Database Management Systems - trends
  • Databases
  • Energy policy
  • environments
  • Genomes
  • Genomics
  • Government agencies
  • Humans
  • Knowledge Bases
  • Knowledge bases (artificial intelligence)
  • KNOWLEDGE MANAGEMENT AND PRESERVATION
  • MATHEMATICS AND COMPUTING
  • Metabolism
  • Metabolites
  • Narratives
  • Open source software
  • Reproducibility
  • Software
  • Systems Biology
  • Systems Biology - trends
  • Technology application
  • United States
  • Usage
  • User interface
ispartof: Nature Biotechnology, 2018-07-06, Vol.36 (7), p.566-569
description:
language: eng
source:
identifier: ISSN: 1087-0156
fulltext: no_fulltext
issn:
  • 1087-0156
  • 1546-1696
url: Link


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2DOI: 10.1038/nbt.4163
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languageeng
publisherUnited States: Nature Publishing Group
subjectArticle ; BASIC BIOLOGICAL SCIENCES ; Biology ; Computational Biology ; Computational Biology - methods ; Computational platforms ; Computational platforms and environments ; Data integration ; Data models ; Database Management Systems ; Database Management Systems - trends ; Databases ; Energy policy ; environments ; Genomes ; Genomics ; Government agencies ; Humans ; Knowledge Bases ; Knowledge bases (artificial intelligence) ; KNOWLEDGE MANAGEMENT AND PRESERVATION ; MATHEMATICS AND COMPUTING ; Metabolism ; Metabolites ; Narratives ; Open source software ; Reproducibility ; Software ; Systems Biology ; Systems Biology - trends ; Technology application ; United States ; Usage ; User interface
ispartofNature Biotechnology, 2018-07-06, Vol.36 (7), p.566-569
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0KBase: The United States Department of Energy Systems Biology Knowledgebase
1Nature Biotechnology
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titleKBase: The United States Department of Energy Systems Biology Knowledgebase
authorArkin, Adam P ; Cottingham, Robert W ; Henry, Christopher S ; Harris, Nomi L ; Stevens, Rick L ; Maslov, Sergei ; Dehal, Paramvir ; Ware, Doreen ; Perez, Fernando ; Canon, Shane ; Sneddon, Michael W ; Henderson, Matthew L ; Riehl, William J ; Murphy-Olson, Dan ; Chan, Stephen Y ; Kamimura, Roy T ; Kumari, Sunita ; Drake, Meghan M ; Brettin, Thomas S ; Glass, Elizabeth M ; Chivian, Dylan ; Gunter, Dan ; Weston, David J ; Allen, Benjamin H ; Baumohl, Jason ; Best, Aaron A ; Bowen, Ben ; Brenner, Steven E ; Bun, Christopher C ; Chandonia, John-Marc ; Chia, Jer-Ming ; Colasanti, Ric ; Conrad, Neal ; Davis, James J ; Davison, Brian H ; DeJongh, Matthew ; Devoid, Scott ; Dietrich, Emily ; Dubchak, Inna ; Edirisinghe, Janaka N ; Fang, Gang ; Faria, José P ; Frybarger, Paul M ; Gerlach, Wolfgang ; Gerstein, Mark ; Greiner, Annette ; Gurtowski, James ; Haun, Holly L ; He, Fei ; Jain, Rashmi ; Joachimiak, Marcin P ; Keegan, Kevin P ; Kondo, Shinnosuke ; Kumar, Vivek ; Land, Miriam L ; Meyer, Folker ; Mills, Marissa ; Novichkov, Pavel S ; Oh, Taeyun ; Olsen, Gary J ; Olson, Robert ; Parrello, Bruce ; Pasternak, Shiran ; Pearson, Erik ; Poon, Sarah S ; Price, Gavin A ; Ramakrishnan, Srividya ; Ranjan, Priya ; Ronald, Pamela C ; Schatz, Michael C ; Seaver, Samuel M D ; Shukla, Maulik ; Sutormin, Roman A ; Syed, Mustafa H ; Thomason, James ; Tintle, Nathan L ; Wang, Daifeng ; Xia, Fangfang ; Yoo, Hyunseung ; Yoo, Shinjae ; Yu, Dantong
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1BASIC BIOLOGICAL SCIENCES
2Biology
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5Computational platforms
6Computational platforms and environments
7Data integration
8Data models
9Database Management Systems
10Database Management Systems - trends
11Databases
12Energy policy
13environments
14Genomes
15Genomics
16Government agencies
17Humans
18Knowledge Bases
19Knowledge bases (artificial intelligence)
20KNOWLEDGE MANAGEMENT AND PRESERVATION
21MATHEMATICS AND COMPUTING
22Metabolism
23Metabolites
24Narratives
25Open source software
26Reproducibility
27Software
28Systems Biology
29Systems Biology - trends
30Technology application
31United States
32Usage
33User interface
toplevelpeer_reviewed
creatorcontrib
0Arkin, Adam P
1Cottingham, Robert W
2Henry, Christopher S
3Harris, Nomi L
4Stevens, Rick L
5Maslov, Sergei
6Dehal, Paramvir
7Ware, Doreen
8Perez, Fernando
9Canon, Shane
10Sneddon, Michael W
11Henderson, Matthew L
12Riehl, William J
13Murphy-Olson, Dan
14Chan, Stephen Y
15Kamimura, Roy T
16Kumari, Sunita
17Drake, Meghan M
18Brettin, Thomas S
19Glass, Elizabeth M
20Chivian, Dylan
21Gunter, Dan
22Weston, David J
23Allen, Benjamin H
24Baumohl, Jason
25Best, Aaron A
26Bowen, Ben
27Brenner, Steven E
28Bun, Christopher C
29Chandonia, John-Marc
30Chia, Jer-Ming
31Colasanti, Ric
32Conrad, Neal
33Davis, James J
34Davison, Brian H
35DeJongh, Matthew
36Devoid, Scott
37Dietrich, Emily
38Dubchak, Inna
39Edirisinghe, Janaka N
40Fang, Gang
41Faria, José P
42Frybarger, Paul M
43Gerlach, Wolfgang
44Gerstein, Mark
45Greiner, Annette
46Gurtowski, James
47Haun, Holly L
48He, Fei
49Jain, Rashmi
50Joachimiak, Marcin P
51Keegan, Kevin P
52Kondo, Shinnosuke
53Kumar, Vivek
54Land, Miriam L
55Meyer, Folker
56Mills, Marissa
57Novichkov, Pavel S
58Oh, Taeyun
59Olsen, Gary J
60Olson, Robert
61Parrello, Bruce
62Pasternak, Shiran
63Pearson, Erik
64Poon, Sarah S
65Price, Gavin A
66Ramakrishnan, Srividya
67Ranjan, Priya
68Ronald, Pamela C
69Schatz, Michael C
70Seaver, Samuel M D
71Shukla, Maulik
72Sutormin, Roman A
73Syed, Mustafa H
74Thomason, James
75Tintle, Nathan L
76Wang, Daifeng
77Xia, Fangfang
78Yoo, Hyunseung
79Yoo, Shinjae
80Yu, Dantong
81Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States)
82Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
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jtitleNature Biotechnology
delivery
delcategoryRemote Search Resource
fulltextno_fulltext
addata
au
0Arkin, Adam P
1Cottingham, Robert W
2Henry, Christopher S
3Harris, Nomi L
4Stevens, Rick L
5Maslov, Sergei
6Dehal, Paramvir
7Ware, Doreen
8Perez, Fernando
9Canon, Shane
10Sneddon, Michael W
11Henderson, Matthew L
12Riehl, William J
13Murphy-Olson, Dan
14Chan, Stephen Y
15Kamimura, Roy T
16Kumari, Sunita
17Drake, Meghan M
18Brettin, Thomas S
19Glass, Elizabeth M
20Chivian, Dylan
21Gunter, Dan
22Weston, David J
23Allen, Benjamin H
24Baumohl, Jason
25Best, Aaron A
26Bowen, Ben
27Brenner, Steven E
28Bun, Christopher C
29Chandonia, John-Marc
30Chia, Jer-Ming
31Colasanti, Ric
32Conrad, Neal
33Davis, James J
34Davison, Brian H
35DeJongh, Matthew
36Devoid, Scott
37Dietrich, Emily
38Dubchak, Inna
39Edirisinghe, Janaka N
40Fang, Gang
41Faria, José P
42Frybarger, Paul M
43Gerlach, Wolfgang
44Gerstein, Mark
45Greiner, Annette
46Gurtowski, James
47Haun, Holly L
48He, Fei
49Jain, Rashmi
50Joachimiak, Marcin P
51Keegan, Kevin P
52Kondo, Shinnosuke
53Kumar, Vivek
54Land, Miriam L
55Meyer, Folker
56Mills, Marissa
57Novichkov, Pavel S
58Oh, Taeyun
59Olsen, Gary J
60Olson, Robert
61Parrello, Bruce
62Pasternak, Shiran
63Pearson, Erik
64Poon, Sarah S
65Price, Gavin A
66Ramakrishnan, Srividya
67Ranjan, Priya
68Ronald, Pamela C
69Schatz, Michael C
70Seaver, Samuel M D
71Shukla, Maulik
72Sutormin, Roman A
73Syed, Mustafa H
74Thomason, James
75Tintle, Nathan L
76Wang, Daifeng
77Xia, Fangfang
78Yoo, Hyunseung
79Yoo, Shinjae
80Yu, Dantong
aucorp
0Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States)
1Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
formatjournal
genrearticle
ristypeJOUR
atitleKBase: The United States Department of Energy Systems Biology Knowledgebase
jtitleNature Biotechnology
addtitleNat Biotechnol
date2018-07-06
risdate2018
volume36
issue7
spage566
epage569
pages566-569
issn1087-0156
eissn1546-1696
notes
0AC05-00OR22725; AC02-05CH11231; AC02-06CH11357; AC02-98CH10886
1USDOE Office of Science (SC), Biological and Environmental Research (BER)
copUnited States
pubNature Publishing Group
pmid29979655
doi10.1038/nbt.4163
tpages4
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