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Segmentation of the mouse hippocampal formation in magnetic resonance images

The hippocampal formation plays an important role in cognition, spatial navigation, learning, and memory. High resolution magnetic resonance (MR) imaging makes it possible to study changes in the hippocampus over time and is useful for comparing hippocampal volume and structure in wild type and muta... Full description

Journal Title: NeuroImage 01 October 2011, Vol.58(3), pp.732-740
Main Author: Richards, Kay
Other Authors: Watson, Charles , Buckley, Rachel F , Kurniawan, Nyoman D , Yang, Zhengyi , Keller, Marianne D , Beare, Richard , Bartlett, Perry F , Egan, Gary F , Galloway, Graham J , Paxinos, George , Petrou, Steven , Reutens, David C
Format: Electronic Article Electronic Article
Language: English
Subjects:
ID: ISSN: 1053-8119 ; E-ISSN: 1095-9572 ; DOI: 10.1016/j.neuroimage.2011.06.025
Link: https://www.sciencedirect.com/science/article/pii/S1053811911006434
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recordid: elsevier_sdoi_10_1016_j_neuroimage_2011_06_025
title: Segmentation of the mouse hippocampal formation in magnetic resonance images
format: Article
creator:
  • Richards, Kay
  • Watson, Charles
  • Buckley, Rachel F
  • Kurniawan, Nyoman D
  • Yang, Zhengyi
  • Keller, Marianne D
  • Beare, Richard
  • Bartlett, Perry F
  • Egan, Gary F
  • Galloway, Graham J
  • Paxinos, George
  • Petrou, Steven
  • Reutens, David C
subjects:
  • Hippocampus
  • Hippocampal Formation
  • Ca Fields
  • Perirhinal
  • Entorhinal
  • Subiculum
  • Magnetic Resonance
  • Segmentation
  • Mouse Brain
  • Atlas
  • Medicine
ispartof: NeuroImage, 01 October 2011, Vol.58(3), pp.732-740
description: The hippocampal formation plays an important role in cognition, spatial navigation, learning, and memory. High resolution magnetic resonance (MR) imaging makes it possible to study changes in the hippocampus over time and is useful for comparing hippocampal volume and structure in wild type and mutant mice. Such comparisons demand a reliable way to segment the hippocampal formation. We have developed a method for the systematic segmentation of the hippocampal formation using the perfusion-fixed C57BL/6 mouse brain for application in longitudinal and comparative studies. Our aim was to develop a guide for segmenting over 40 structures in an adult mouse brain using 30 μm isotropic resolution images acquired with a 16.4 T MR imaging system and combined using super-resolution reconstruction. ► Development of an MR-based mouse hippocampal atlas ► Delineation of the anatomical boundaries of 40 hippocampal sub-regions ► Volumetric analysis of hippocampal structures in the adult mouse brain
language: eng
source:
identifier: ISSN: 1053-8119 ; E-ISSN: 1095-9572 ; DOI: 10.1016/j.neuroimage.2011.06.025
fulltext: fulltext
issn:
  • 1053-8119
  • 10538119
  • 1095-9572
  • 10959572
url: Link


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titleSegmentation of the mouse hippocampal formation in magnetic resonance images
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subjectHippocampus ; Hippocampal Formation ; Ca Fields ; Perirhinal ; Entorhinal ; Subiculum ; Magnetic Resonance ; Segmentation ; Mouse Brain ; Atlas ; Medicine
descriptionThe hippocampal formation plays an important role in cognition, spatial navigation, learning, and memory. High resolution magnetic resonance (MR) imaging makes it possible to study changes in the hippocampus over time and is useful for comparing hippocampal volume and structure in wild type and mutant mice. Such comparisons demand a reliable way to segment the hippocampal formation. We have developed a method for the systematic segmentation of the hippocampal formation using the perfusion-fixed C57BL/6 mouse brain for application in longitudinal and comparative studies. Our aim was to develop a guide for segmenting over 40 structures in an adult mouse brain using 30 μm isotropic resolution images acquired with a 16.4 T MR imaging system and combined using super-resolution reconstruction. ► Development of an MR-based mouse hippocampal atlas ► Delineation of the anatomical boundaries of 40 hippocampal sub-regions ► Volumetric analysis of hippocampal structures in the adult mouse brain
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