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A segmentation protocol and MRI atlas of the C57BL/6J mouse neocortex

To link to full-text access for this article, visit this link: http://dx.doi.org/10.1016/j.neuroimage.2013.04.008 Byline: Jeremy F.P. Ullmann, Charles Watson, Andrew L. Janke, Nyoman D. Kurniawan, David C. Reutens Abstract: The neocortex is the largest component of the mammalian cerebral cortex. It... Full description

Journal Title: Neuroimage Sept, 2013, Vol.78, p.196(8)
Main Author: Ullmann, Jeremy F. P.
Other Authors: Watson, Charles , Janke, Andrew L. , Kurniawan, Nyoman D. , Reutens, David C.
Format: Electronic Article Electronic Article
Language: English
Subjects:
Quelle: Cengage Learning, Inc.
ID: ISSN: 1053-8119
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recordid: gale_ofa333324897
title: A segmentation protocol and MRI atlas of the C57BL/6J mouse neocortex
format: Article
creator:
  • Ullmann, Jeremy F. P.
  • Watson, Charles
  • Janke, Andrew L.
  • Kurniawan, Nyoman D.
  • Reutens, David C.
subjects:
  • House Mouse -- Analysis
  • Magnetic Resonance Imaging -- Analysis
ispartof: Neuroimage, Sept, 2013, Vol.78, p.196(8)
description: To link to full-text access for this article, visit this link: http://dx.doi.org/10.1016/j.neuroimage.2013.04.008 Byline: Jeremy F.P. Ullmann, Charles Watson, Andrew L. Janke, Nyoman D. Kurniawan, David C. Reutens Abstract: The neocortex is the largest component of the mammalian cerebral cortex. It integrates sensory inputs with experiences and memory to produce sophisticated responses to an organism's internal and external environment. While areal patterning of the mouse neocortex has been mapped using histological techniques, the neocortex has not been comprehensively segmented in magnetic resonance images. This study presents a method for systematic segmentation of the C57BL/6J mouse neocortex. We created a minimum deformation atlas, which was hierarchically segmented into 74 neocortical and cortical-related regions, making it the most detailed atlas of the mouse neocortex currently available. In addition, we provide mean volumes and relative intensities for each structure as well as a nomenclature comparison between the two most cited histological atlases of the mouse brain. This MR atlas is available for download, and it should enable researchers to perform automated segmentation in genetic models of cortical disorders. Article History: Accepted 5 April 2013
language: English
source: Cengage Learning, Inc.
identifier: ISSN: 1053-8119
fulltext: fulltext
issn:
  • 1053-8119
  • 10538119
url: Link


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descriptionTo link to full-text access for this article, visit this link: http://dx.doi.org/10.1016/j.neuroimage.2013.04.008 Byline: Jeremy F.P. Ullmann, Charles Watson, Andrew L. Janke, Nyoman D. Kurniawan, David C. Reutens Abstract: The neocortex is the largest component of the mammalian cerebral cortex. It integrates sensory inputs with experiences and memory to produce sophisticated responses to an organism's internal and external environment. While areal patterning of the mouse neocortex has been mapped using histological techniques, the neocortex has not been comprehensively segmented in magnetic resonance images. This study presents a method for systematic segmentation of the C57BL/6J mouse neocortex. We created a minimum deformation atlas, which was hierarchically segmented into 74 neocortical and cortical-related regions, making it the most detailed atlas of the mouse neocortex currently available. In addition, we provide mean volumes and relative intensities for each structure as well as a nomenclature comparison between the two most cited histological atlases of the mouse brain. This MR atlas is available for download, and it should enable researchers to perform automated segmentation in genetic models of cortical disorders. Article History: Accepted 5 April 2013
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abstractTo link to full-text access for this article, visit this link: http://dx.doi.org/10.1016/j.neuroimage.2013.04.008 Byline: Jeremy F.P. Ullmann, Charles Watson, Andrew L. Janke, Nyoman D. Kurniawan, David C. Reutens Abstract: The neocortex is the largest component of the mammalian cerebral cortex. It integrates sensory inputs with experiences and memory to produce sophisticated responses to an organism's internal and external environment. While areal patterning of the mouse neocortex has been mapped using histological techniques, the neocortex has not been comprehensively segmented in magnetic resonance images. This study presents a method for systematic segmentation of the C57BL/6J mouse neocortex. We created a minimum deformation atlas, which was hierarchically segmented into 74 neocortical and cortical-related regions, making it the most detailed atlas of the mouse neocortex currently available. In addition, we provide mean volumes and relative intensities for each structure as well as a nomenclature comparison between the two most cited histological atlases of the mouse brain. This MR atlas is available for download, and it should enable researchers to perform automated segmentation in genetic models of cortical disorders. Article History: Accepted 5 April 2013
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