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Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea

Here, we present two standards developed by the Genomic Standards Consortium (GSC) for reporting bacterial and archaeal genome sequences. Both are extensions of the Minimum Information about Any (x) Sequence (MIxS). The standards are the Minimum Information about a Single Amplified Genome (MISAG) an... Full description

Journal Title: Nature Biotechnology 2017, Vol.35(8), p.725
Main Author: Robert M Bowers
Other Authors: Nikos C Kyrpides , Ramunas Stepanauskas , Miranda Harmon-Smith , Devin Doud , T B K Reddy , Frederik Schulz , Jessica Jarett , Adam R Rivers , Emiley A Eloe-Fadrosh , Susannah G Tringe , Natalia N Ivanova , Alex Copeland , Alicia Clum , Eric D Becraft , Rex R Malmstrom , Bruce Birren , Mircea Podar , Peer Bork , George M Weinstock , George M Garrity , Jeremy A Dodsworth , Shibu Yooseph , Granger Sutton , Frank O Glöckner , Jack A Gilbert , William C Nelson , Steven J Hallam , Sean P Jungbluth , Thijs J G Ettema , Scott Tighe , Konstantinos T Konstantinidis , Wen-Tso Liu , Brett J Baker , Thomas Rattei , Jonathan A Eisen , Brian Hedlund , Katherine D Mcmahon , Noah Fierer , Rob Knight , Rob Finn , Guy Cochrane , Ilene Karsch-Mizrachi , Gene W Tyson , Christian Rinke , Alla Lapidus , Folker Meyer , Pelin Yilmaz , Donovan H Parks , A M Eren , Lynn Schriml , Jillian F Banfield , Philip Hugenholtz , Tanja Woyke
Format: Electronic Article Electronic Article
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ID: ISSN: 1087-0156 ; E-ISSN: 1546-1696 ; DOI: 10.1038/nbt.3893
Link: http://dx.doi.org/10.1038/nbt.3893
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recordid: nature_a10.1038/nbt.3893
title: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea
format: Article
creator:
  • Robert M Bowers
  • Nikos C Kyrpides
  • Ramunas Stepanauskas
  • Miranda Harmon-Smith
  • Devin Doud
  • T B K Reddy
  • Frederik Schulz
  • Jessica Jarett
  • Adam R Rivers
  • Emiley A Eloe-Fadrosh
  • Susannah G Tringe
  • Natalia N Ivanova
  • Alex Copeland
  • Alicia Clum
  • Eric D Becraft
  • Rex R Malmstrom
  • Bruce Birren
  • Mircea Podar
  • Peer Bork
  • George M Weinstock
  • George M Garrity
  • Jeremy A Dodsworth
  • Shibu Yooseph
  • Granger Sutton
  • Frank O Glöckner
  • Jack A Gilbert
  • William C Nelson
  • Steven J Hallam
  • Sean P Jungbluth
  • Thijs J G Ettema
  • Scott Tighe
  • Konstantinos T Konstantinidis
  • Wen-Tso Liu
  • Brett J Baker
  • Thomas Rattei
  • Jonathan A Eisen
  • Brian Hedlund
  • Katherine D Mcmahon
  • Noah Fierer
  • Rob Knight
  • Rob Finn
  • Guy Cochrane
  • Ilene Karsch-Mizrachi
  • Gene W Tyson
  • Christian Rinke
  • Alla Lapidus
  • Folker Meyer
  • Pelin Yilmaz
  • Donovan H Parks
  • A M Eren
  • Lynn Schriml
  • Jillian F Banfield
  • Philip Hugenholtz
  • Tanja Woyke
subjects:
  • Basic Biological Sciences
  • 60 Applied LIFE Sciences
  • Medicine
  • Engineering
  • Biology
ispartof: Nature Biotechnology, 2017, Vol.35(8), p.725
description: Here, we present two standards developed by the Genomic Standards Consortium (GSC) for reporting bacterial and archaeal genome sequences. Both are extensions of the Minimum Information about Any (x) Sequence (MIxS). The standards are the Minimum Information about a Single Amplified Genome (MISAG) and the Minimum Information about a MetagenomeAssembled Genome (MIMAG), including, but not limited to, assembly quality, and estimates of genome completeness and contamination. These standards can be used in combination with other GSC checklists, including the Minimum Information about a Genome Sequence (MIGS), Minimum Information about a Metagenomic Sequence (MIMS), and Minimum Information about a Marker Gene Sequence (MIMARKS). Community-wide adoption of MISAG and MIMAG will facilitate more robust comparative genomic analyses of bacterial and archaeal diversity.
language:
source:
identifier: ISSN: 1087-0156 ; E-ISSN: 1546-1696 ; DOI: 10.1038/nbt.3893
fulltext: fulltext
issn:
  • 1087-0156
  • 10870156
  • 1546-1696
  • 15461696
url: Link


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titleMinimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea
creatorRobert M Bowers ; Nikos C Kyrpides ; Ramunas Stepanauskas ; Miranda Harmon-Smith ; Devin Doud ; T B K Reddy ; Frederik Schulz ; Jessica Jarett ; Adam R Rivers ; Emiley A Eloe-Fadrosh ; Susannah G Tringe ; Natalia N Ivanova ; Alex Copeland ; Alicia Clum ; Eric D Becraft ; Rex R Malmstrom ; Bruce Birren ; Mircea Podar ; Peer Bork ; George M Weinstock ; George M Garrity ; Jeremy A Dodsworth ; Shibu Yooseph ; Granger Sutton ; Frank O Glöckner ; Jack A Gilbert ; William C Nelson ; Steven J Hallam ; Sean P Jungbluth ; Thijs J G Ettema ; Scott Tighe ; Konstantinos T Konstantinidis ; Wen-Tso Liu ; Brett J Baker ; Thomas Rattei ; Jonathan A Eisen ; Brian Hedlund ; Katherine D Mcmahon ; Noah Fierer ; Rob Knight ; Rob Finn ; Guy Cochrane ; Ilene Karsch-Mizrachi ; Gene W Tyson ; Christian Rinke ; Alla Lapidus ; Folker Meyer ; Pelin Yilmaz ; Donovan H Parks ; A M Eren ; Lynn Schriml ; Jillian F Banfield ; Philip Hugenholtz ; Tanja Woyke
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descriptionHere, we present two standards developed by the Genomic Standards Consortium (GSC) for reporting bacterial and archaeal genome sequences. Both are extensions of the Minimum Information about Any (x) Sequence (MIxS). The standards are the Minimum Information about a Single Amplified Genome (MISAG) and the Minimum Information about a MetagenomeAssembled Genome (MIMAG), including, but not limited to, assembly quality, and estimates of genome completeness and contamination. These standards can be used in combination with other GSC checklists, including the Minimum Information about a Genome Sequence (MIGS), Minimum Information about a Metagenomic Sequence (MIMS), and Minimum Information about a Marker Gene Sequence (MIMARKS). Community-wide adoption of MISAG and MIMAG will facilitate more robust comparative genomic analyses of bacterial and archaeal diversity.
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8Adam R Rivers
9Emiley A Eloe-Fadrosh
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atitleMinimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea
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