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Complete sequencing and characterization of 21,243 full-length human cDNAs

As a base for human transcriptome and functional genomics, we created the "full-length long Japan" (FLJ) collection of sequenced human cDNAs. We determined the entire sequence of 21,243 selected clones and found that 14,490 cDNAs (10,897 clusters) were unique to the FLJ collection. About half of the... Full description

Journal Title: Nature Genetics 2003, Vol.36(1), p.40
Main Author: Toshio Ota
Other Authors: Yutaka Suzuki , Tetsuo Nishikawa , Tetsuji Otsuki , Tomoyasu Sugiyama , Ryotaro Irie , Ai Wakamatsu , Koji Hayashi , Hiroyuki Sato , Keiichi Nagai , Kouichi Kimura , Hiroshi Makita , Mitsuo Sekine , Masaya Obayashi , Tatsunari Nishi , Toshikazu Shibahara , Toshihiro Tanaka , Shizuko Ishii , Jun-Ichi Yamamoto , Kaoru Saito , Yuri Kawai , Yuko Isono , Yoshitaka Nakamura , Kenji Nagahari , Katsuhiko Murakami , Tomohiro Yasuda , Takao Iwayanagi , Masako Wagatsuma , Akiko Shiratori , Hiroaki Sudo , Takehiko Hosoiri , Yoshiko Kaku , Hiroyo Kodaira , Hiroshi Kondo , Masanori Sugawara , Makiko Takahashi , Katsuhiro Kanda , Takahide Yokoi , Takako Furuya , Emiko Kikkawa , Yuhi Omura , Kumi Abe , Kumiko Kamihara , Naoko Katsuta , Kazuomi Sato , Machiko Tanikawa , Makoto Yamazaki , Ken Ninomiya , Tadashi Ishibashi , Hiromichi Yamashita , Katsuji Murakawa , Kiyoshi Fujimori , Hiroyuki Tanai , Manabu Kimata , Motoji Watanabe , Susumu Hiraoka , Yoshiyuki Chiba , Shinichi Ishida , Yukio Ono , Sumiyo Takiguchi , Susumu Watanabe , Makoto Yosida , Tomoko Hotuta , Junko Kusano , Keiichi Kanehori , Asako Takahashi-Fujii , Hiroto Hara , Tomo-O Tanase , Yoshiko Nomura , Sakae Togiya , Fukuyo Komai , Reiko Hara , Kazuha Takeuchi , Miho Arita , Nobuyuki Imose , Kaoru Musashino , Hisatsugu Yuuki , Atsushi Oshima , Naokazu Sasaki , Satoshi Aotsuka , Yoko Yoshikawa , Hiroshi Matsunawa , Tatsuo Ichihara , Namiko Shiohata , Sanae Sano , Shogo Moriya , Hiroko Momiyama , Noriko Satoh , Sachiko Takami , Yuko Terashima , Osamu Suzuki , Satoshi Nakagawa , Akihiro Senoh , Hiroshi Mizoguchi , Yoshihiro Goto , Fumio Shimizu , Hirokazu Wakebe , Haretsugu Hishigaki , Takeshi Watanabe , Akio Sugiyama , Makoto Takemoto , Bunsei Kawakami , Masaaki Yamazaki , Koji Watanabe , Ayako Kumagai , Shoko Itakura , Yasuhito Fukuzumi , Yoshifumi Fujimori , Megumi Komiyama , Hiroyuki Tashiro , Akira Tanigami , Tsutomu Fujiwara , Toshihide Ono , Katsue Yamada , Yuka Fujii , Kouichi Ozaki , Maasa Hirao , Yoshihiro Ohmori , Ayako Kawabata , Takeshi Hikiji , Naoko Kobatake , Hiromi Inagaki , Yasuko Ikema , Sachiko Okamoto , Rie Okitani , Takuma Kawakami , Saori Noguchi , Tomoko Itoh , Keiko Shigeta , Tadashi Senba , Kyoka Matsumura , Yoshie Nakajima , Takae Mizuno , Misato Morinaga , Masahide Sasaki , Takushi Togashi , Masaaki Oyama , Hiroko Hata , Manabu Watanabe , Takami Komatsu , Junko Mizushima-Sugano , Tadashi Satoh , Yuko Shirai , Yukiko Takahashi , Kiyomi Nakagawa , Koji Okumura , Takahiro Nagase , Nobuo Nomura , Hisashi Kikuchi , Yasuhiko Masuho , Riu Yamashita , Kenta Nakai , Tetsushi Yada , Yusuke Nakamura , Osamu Ohara , Takao Isogai , Sumio Sugano
Format: Electronic Article Electronic Article
Language:
Subjects:
ID: ISSN: 1061-4036 ; E-ISSN: 1546-1718 ; DOI: 10.1038/ng1285
Link: http://dx.doi.org/10.1038/ng1285
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recordid: nature_a10.1038/ng1285
title: Complete sequencing and characterization of 21,243 full-length human cDNAs
format: Article
creator:
  • Toshio Ota
  • Yutaka Suzuki
  • Tetsuo Nishikawa
  • Tetsuji Otsuki
  • Tomoyasu Sugiyama
  • Ryotaro Irie
  • Ai Wakamatsu
  • Koji Hayashi
  • Hiroyuki Sato
  • Keiichi Nagai
  • Kouichi Kimura
  • Hiroshi Makita
  • Mitsuo Sekine
  • Masaya Obayashi
  • Tatsunari Nishi
  • Toshikazu Shibahara
  • Toshihiro Tanaka
  • Shizuko Ishii
  • Jun-Ichi Yamamoto
  • Kaoru Saito
  • Yuri Kawai
  • Yuko Isono
  • Yoshitaka Nakamura
  • Kenji Nagahari
  • Katsuhiko Murakami
  • Tomohiro Yasuda
  • Takao Iwayanagi
  • Masako Wagatsuma
  • Akiko Shiratori
  • Hiroaki Sudo
  • Takehiko Hosoiri
  • Yoshiko Kaku
  • Hiroyo Kodaira
  • Hiroshi Kondo
  • Masanori Sugawara
  • Makiko Takahashi
  • Katsuhiro Kanda
  • Takahide Yokoi
  • Takako Furuya
  • Emiko Kikkawa
  • Yuhi Omura
  • Kumi Abe
  • Kumiko Kamihara
  • Naoko Katsuta
  • Kazuomi Sato
  • Machiko Tanikawa
  • Makoto Yamazaki
  • Ken Ninomiya
  • Tadashi Ishibashi
  • Hiromichi Yamashita
  • Katsuji Murakawa
  • Kiyoshi Fujimori
  • Hiroyuki Tanai
  • Manabu Kimata
  • Motoji Watanabe
  • Susumu Hiraoka
  • Yoshiyuki Chiba
  • Shinichi Ishida
  • Yukio Ono
  • Sumiyo Takiguchi
  • Susumu Watanabe
  • Makoto Yosida
  • Tomoko Hotuta
  • Junko Kusano
  • Keiichi Kanehori
  • Asako Takahashi-Fujii
  • Hiroto Hara
  • Tomo-O Tanase
  • Yoshiko Nomura
  • Sakae Togiya
  • Fukuyo Komai
  • Reiko Hara
  • Kazuha Takeuchi
  • Miho Arita
  • Nobuyuki Imose
  • Kaoru Musashino
  • Hisatsugu Yuuki
  • Atsushi Oshima
  • Naokazu Sasaki
  • Satoshi Aotsuka
  • Yoko Yoshikawa
  • Hiroshi Matsunawa
  • Tatsuo Ichihara
  • Namiko Shiohata
  • Sanae Sano
  • Shogo Moriya
  • Hiroko Momiyama
  • Noriko Satoh
  • Sachiko Takami
  • Yuko Terashima
  • Osamu Suzuki
  • Satoshi Nakagawa
  • Akihiro Senoh
  • Hiroshi Mizoguchi
  • Yoshihiro Goto
  • Fumio Shimizu
  • Hirokazu Wakebe
  • Haretsugu Hishigaki
  • Takeshi Watanabe
  • Akio Sugiyama
  • Makoto Takemoto
  • Bunsei Kawakami
  • Masaaki Yamazaki
  • Koji Watanabe
  • Ayako Kumagai
  • Shoko Itakura
  • Yasuhito Fukuzumi
  • Yoshifumi Fujimori
  • Megumi Komiyama
  • Hiroyuki Tashiro
  • Akira Tanigami
  • Tsutomu Fujiwara
  • Toshihide Ono
  • Katsue Yamada
  • Yuka Fujii
  • Kouichi Ozaki
  • Maasa Hirao
  • Yoshihiro Ohmori
  • Ayako Kawabata
  • Takeshi Hikiji
  • Naoko Kobatake
  • Hiromi Inagaki
  • Yasuko Ikema
  • Sachiko Okamoto
  • Rie Okitani
  • Takuma Kawakami
  • Saori Noguchi
  • Tomoko Itoh
  • Keiko Shigeta
  • Tadashi Senba
  • Kyoka Matsumura
  • Yoshie Nakajima
  • Takae Mizuno
  • Misato Morinaga
  • Masahide Sasaki
  • Takushi Togashi
  • Masaaki Oyama
  • Hiroko Hata
  • Manabu Watanabe
  • Takami Komatsu
  • Junko Mizushima-Sugano
  • Tadashi Satoh
  • Yuko Shirai
  • Yukiko Takahashi
  • Kiyomi Nakagawa
  • Koji Okumura
  • Takahiro Nagase
  • Nobuo Nomura
  • Hisashi Kikuchi
  • Yasuhiko Masuho
  • Riu Yamashita
  • Kenta Nakai
  • Tetsushi Yada
  • Yusuke Nakamura
  • Osamu Ohara
  • Takao Isogai
  • Sumio Sugano
subjects:
  • Biology
ispartof: Nature Genetics, 2003, Vol.36(1), p.40
description: As a base for human transcriptome and functional genomics, we created the "full-length long Japan" (FLJ) collection of sequenced human cDNAs. We determined the entire sequence of 21,243 selected clones and found that 14,490 cDNAs (10,897 clusters) were unique to the FLJ collection. About half of them (5,416) seemed to be protein-coding. Of those, 1,999 clusters had not been predicted by computational methods. The distribution of GC content of nonpredicted cDNAs had a peak at approximately 58% compared with a peak at approximately 42%for predicted cDNAs. Thus, there seems to be a slight bias against GC-rich transcripts in current gene prediction procedures. The rest of the cDNAs unique to the FLJ collection (5,481) contained no obvious open reading frames (ORFs) and thus are candidate noncoding RNAs. About one-fourth of them (1,378) showed a clear pattern of splicing. The distribution of GC content of noncoding cDNAs was narrow and had a peak at approximately 42%, relatively low compared with that of protein-coding cDNAs.
language:
source:
identifier: ISSN: 1061-4036 ; E-ISSN: 1546-1718 ; DOI: 10.1038/ng1285
fulltext: fulltext
issn:
  • 1061-4036
  • 10614036
  • 1546-1718
  • 15461718
url: Link


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titleComplete sequencing and characterization of 21,243 full-length human cDNAs
creatorToshio Ota ; Yutaka Suzuki ; Tetsuo Nishikawa ; Tetsuji Otsuki ; Tomoyasu Sugiyama ; Ryotaro Irie ; Ai Wakamatsu ; Koji Hayashi ; Hiroyuki Sato ; Keiichi Nagai ; Kouichi Kimura ; Hiroshi Makita ; Mitsuo Sekine ; Masaya Obayashi ; Tatsunari Nishi ; Toshikazu Shibahara ; Toshihiro Tanaka ; Shizuko Ishii ; Jun-Ichi Yamamoto ; Kaoru Saito ; Yuri Kawai ; Yuko Isono ; Yoshitaka Nakamura ; Kenji Nagahari ; Katsuhiko Murakami ; Tomohiro Yasuda ; Takao Iwayanagi ; Masako Wagatsuma ; Akiko Shiratori ; Hiroaki Sudo ; Takehiko Hosoiri ; Yoshiko Kaku ; Hiroyo Kodaira ; Hiroshi Kondo ; Masanori Sugawara ; Makiko Takahashi ; Katsuhiro Kanda ; Takahide Yokoi ; Takako Furuya ; Emiko Kikkawa ; Yuhi Omura ; Kumi Abe ; Kumiko Kamihara ; Naoko Katsuta ; Kazuomi Sato ; Machiko Tanikawa ; Makoto Yamazaki ; Ken Ninomiya ; Tadashi Ishibashi ; Hiromichi Yamashita ; Katsuji Murakawa ; Kiyoshi Fujimori ; Hiroyuki Tanai ; Manabu Kimata ; Motoji Watanabe ; Susumu Hiraoka ; Yoshiyuki Chiba ; Shinichi Ishida ; Yukio Ono ; Sumiyo Takiguchi ; Susumu Watanabe ; Makoto Yosida ; Tomoko Hotuta ; Junko Kusano ; Keiichi Kanehori ; Asako Takahashi-Fujii ; Hiroto Hara ; Tomo-O Tanase ; Yoshiko Nomura ; Sakae Togiya ; Fukuyo Komai ; Reiko Hara ; Kazuha Takeuchi ; Miho Arita ; Nobuyuki Imose ; Kaoru Musashino ; Hisatsugu Yuuki ; Atsushi Oshima ; Naokazu Sasaki ; Satoshi Aotsuka ; Yoko Yoshikawa ; Hiroshi Matsunawa ; Tatsuo Ichihara ; Namiko Shiohata ; Sanae Sano ; Shogo Moriya ; Hiroko Momiyama ; Noriko Satoh ; Sachiko Takami ; Yuko Terashima ; Osamu Suzuki ; Satoshi Nakagawa ; Akihiro Senoh ; Hiroshi Mizoguchi ; Yoshihiro Goto ; Fumio Shimizu ; Hirokazu Wakebe ; Haretsugu Hishigaki ; Takeshi Watanabe ; Akio Sugiyama ; Makoto Takemoto ; Bunsei Kawakami ; Masaaki Yamazaki ; Koji Watanabe ; Ayako Kumagai ; Shoko Itakura ; Yasuhito Fukuzumi ; Yoshifumi Fujimori ; Megumi Komiyama ; Hiroyuki Tashiro ; Akira Tanigami ; Tsutomu Fujiwara ; Toshihide Ono ; Katsue Yamada ; Yuka Fujii ; Kouichi Ozaki ; Maasa Hirao ; Yoshihiro Ohmori ; Ayako Kawabata ; Takeshi Hikiji ; Naoko Kobatake ; Hiromi Inagaki ; Yasuko Ikema ; Sachiko Okamoto ; Rie Okitani ; Takuma Kawakami ; Saori Noguchi ; Tomoko Itoh ; Keiko Shigeta ; Tadashi Senba ; Kyoka Matsumura ; Yoshie Nakajima ; Takae Mizuno ; Misato Morinaga ; Masahide Sasaki ; Takushi Togashi ; Masaaki Oyama ; Hiroko Hata ; Manabu Watanabe ; Takami Komatsu ; Junko Mizushima-Sugano ; Tadashi Satoh ; Yuko Shirai ; Yukiko Takahashi ; Kiyomi Nakagawa ; Koji Okumura ; Takahiro Nagase ; Nobuo Nomura ; Hisashi Kikuchi ; Yasuhiko Masuho ; Riu Yamashita ; Kenta Nakai ; Tetsushi Yada ; Yusuke Nakamura ; Osamu Ohara ; Takao Isogai ; Sumio Sugano
ispartofNature Genetics, 2003, Vol.36(1), p.40
identifier
source
subjectBiology;
descriptionAs a base for human transcriptome and functional genomics, we created the "full-length long Japan" (FLJ) collection of sequenced human cDNAs. We determined the entire sequence of 21,243 selected clones and found that 14,490 cDNAs (10,897 clusters) were unique to the FLJ collection. About half of them (5,416) seemed to be protein-coding. Of those, 1,999 clusters had not been predicted by computational methods. The distribution of GC content of nonpredicted cDNAs had a peak at approximately 58% compared with a peak at approximately 42%for predicted cDNAs. Thus, there seems to be a slight bias against GC-rich transcripts in current gene prediction procedures. The rest of the cDNAs unique to the FLJ collection (5,481) contained no obvious open reading frames (ORFs) and thus are candidate noncoding RNAs. About one-fourth of them (1,378) showed a clear pattern of splicing. The distribution of GC content of noncoding cDNAs was narrow and had a peak at approximately 42%, relatively low compared with that of protein-coding cDNAs.
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2Tetsuo Nishikawa
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5Ryotaro Irie
6Ai Wakamatsu
7Koji Hayashi
8Hiroyuki Sato
9Keiichi Nagai
10Kouichi Kimura
11Hiroshi Makita
12Mitsuo Sekine
13Masaya Obayashi
14Tatsunari Nishi
15Toshikazu Shibahara
16Toshihiro Tanaka
17Shizuko Ishii
18Jun-Ichi Yamamoto
19Kaoru Saito
20Yuri Kawai
21Yuko Isono
22Yoshitaka Nakamura
23Kenji Nagahari
24Katsuhiko Murakami
25Tomohiro Yasuda
26Takao Iwayanagi
27Masako Wagatsuma
28Akiko Shiratori
29Hiroaki Sudo
30Takehiko Hosoiri
31Yoshiko Kaku
32Hiroyo Kodaira
33Hiroshi Kondo
34Masanori Sugawara
35Makiko Takahashi
36Katsuhiro Kanda
37Takahide Yokoi
38Takako Furuya
39Emiko Kikkawa
40Yuhi Omura
41Kumi Abe
42Kumiko Kamihara
43Naoko Katsuta
44Kazuomi Sato
45Machiko Tanikawa
46Makoto Yamazaki
47Ken Ninomiya
48Tadashi Ishibashi
49Hiromichi Yamashita
50Katsuji Murakawa
51Kiyoshi Fujimori
52Hiroyuki Tanai
53Manabu Kimata
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63Junko Kusano
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67Tomo-O Tanase
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74Nobuyuki Imose
75Kaoru Musashino
76Hisatsugu Yuuki
77Atsushi Oshima
78Naokazu Sasaki
79Satoshi Aotsuka
80Yoko Yoshikawa
81Hiroshi Matsunawa
82Tatsuo Ichihara
83Namiko Shiohata
84Sanae Sano
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93Hiroshi Mizoguchi
94Yoshihiro Goto
95Fumio Shimizu
96Hirokazu Wakebe
97Haretsugu Hishigaki
98Takeshi Watanabe
99Akio Sugiyama
100...
titleComplete sequencing and characterization of 21,243 full-length human cDNAs
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titleComplete sequencing and characterization of 21,243 full-length human cDNAs
authorToshio Ota ; Yutaka Suzuki ; Tetsuo Nishikawa ; Tetsuji Otsuki ; Tomoyasu Sugiyama ; Ryotaro Irie ; Ai Wakamatsu ; Koji Hayashi ; Hiroyuki Sato ; Keiichi Nagai ; Kouichi Kimura ; Hiroshi Makita ; Mitsuo Sekine ; Masaya Obayashi ; Tatsunari Nishi ; Toshikazu Shibahara ; Toshihiro Tanaka ; Shizuko Ishii ; Jun-Ichi Yamamoto ; Kaoru Saito ; Yuri Kawai ; Yuko Isono ; Yoshitaka Nakamura ; Kenji Nagahari ; Katsuhiko Murakami ; Tomohiro Yasuda ; Takao Iwayanagi ; Masako Wagatsuma ; Akiko Shiratori ; Hiroaki Sudo ; Takehiko Hosoiri ; Yoshiko Kaku ; Hiroyo Kodaira ; Hiroshi Kondo ; Masanori Sugawara ; Makiko Takahashi ; Katsuhiro Kanda ; Takahide Yokoi ; Takako Furuya ; Emiko Kikkawa ; Yuhi Omura ; Kumi Abe ; Kumiko Kamihara ; Naoko Katsuta ; Kazuomi Sato ; Machiko Tanikawa ; Makoto Yamazaki ; Ken Ninomiya ; Tadashi Ishibashi ; Hiromichi Yamashita ; Katsuji Murakawa ; Kiyoshi Fujimori ; Hiroyuki Tanai ; Manabu Kimata ; Motoji Watanabe ; Susumu Hiraoka ; Yoshiyuki Chiba ; Shinichi Ishida ; Yukio Ono ; Sumiyo Takiguchi ; Susumu Watanabe ; Makoto Yosida ; Tomoko Hotuta ; Junko Kusano ; Keiichi Kanehori ; Asako Takahashi-Fujii ; Hiroto Hara ; Tomo-O Tanase ; Yoshiko Nomura ; Sakae Togiya ; Fukuyo Komai ; Reiko Hara ; Kazuha Takeuchi ; Miho Arita ; Nobuyuki Imose ; Kaoru Musashino ; Hisatsugu Yuuki ; Atsushi Oshima ; Naokazu Sasaki ; Satoshi Aotsuka ; Yoko Yoshikawa ; Hiroshi Matsunawa ; Tatsuo Ichihara ; Namiko Shiohata ; Sanae Sano ; Shogo Moriya ; Hiroko Momiyama ; Noriko Satoh ; Sachiko Takami ; Yuko Terashima ; Osamu Suzuki ; Satoshi Nakagawa ; Akihiro Senoh ; Hiroshi Mizoguchi ; Yoshihiro Goto ; Fumio Shimizu ; Hirokazu Wakebe ; Haretsugu Hishigaki ; Takeshi Watanabe ; Akio Sugiyama ; Makoto Takemoto ; Bunsei Kawakami ; Masaaki Yamazaki ; Koji Watanabe ; Ayako Kumagai ; Shoko Itakura ; Yasuhito Fukuzumi ; Yoshifumi Fujimori ; Megumi Komiyama ; Hiroyuki Tashiro ; Akira Tanigami ; Tsutomu Fujiwara ; Toshihide Ono ; Katsue Yamada ; Yuka Fujii ; Kouichi Ozaki ; Maasa Hirao ; Yoshihiro Ohmori ; Ayako Kawabata ; Takeshi Hikiji ; Naoko Kobatake ; Hiromi Inagaki ; Yasuko Ikema ; Sachiko Okamoto ; Rie Okitani ; Takuma Kawakami ; Saori Noguchi ; Tomoko Itoh ; Keiko Shigeta ; Tadashi Senba ; Kyoka Matsumura ; Yoshie Nakajima ; Takae Mizuno ; Misato Morinaga ; Masahide Sasaki ; Takushi Togashi ; Masaaki Oyama ; Hiroko Hata ; Manabu Watanabe ; Takami Komatsu ; Junko Mizushima-Sugano ; Tadashi Satoh ; Yuko Shirai ; Yukiko Takahashi ; Kiyomi Nakagawa ; Koji Okumura ; Takahiro Nagase ; Nobuo Nomura ; Hisashi Kikuchi ; Yasuhiko Masuho ; Riu Yamashita ; Kenta Nakai ; Tetsushi Yada ; Yusuke Nakamura ; Osamu Ohara ; Takao Isogai ; Sumio Sugano
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94Yoshihiro Goto
95Fumio Shimizu
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97Haretsugu Hishigaki
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79Satoshi Aotsuka
80Yoko Yoshikawa
81Hiroshi Matsunawa
82Tatsuo Ichihara
83Namiko Shiohata
84Sanae Sano
85Shogo Moriya
86Hiroko Momiyama
87Noriko Satoh
88Sachiko Takami
89Yuko Terashima
90Osamu Suzuki
91Satoshi Nakagawa
92Akihiro Senoh
93Hiroshi Mizoguchi
94Yoshihiro Goto
95Fumio Shimizu
96Hirokazu Wakebe
97Haretsugu Hishigaki
98Takeshi Watanabe
99Akio Sugiyama
100...
atitleComplete sequencing and characterization of 21,243 full-length human cDNAs
jtitleNature Genetics
risdate20031221
volume36
issue1
spage40
issn1061-4036
eissn1546-1718
genrearticle
ristypeJOUR
pubNature Publishing Group
doi10.1038/ng1285
pages40-405
date2003-12-21