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Association Mapping for Epistasis and Environmental Interaction of Yield Traits in 323 Cotton Cultivars under 9 Different Environments

Improving yield is a major objective for cotton breeding schemes, and lint yield and its three component traits (boll number, boll weight and lint percentage) are complex traits controlled by multiple genes and various environments. Association mapping was performed to detect markers associated with... Full description

Journal Title: PLoS One May 2014, Vol.9(5), p.e95882
Main Author: Jia, Yinhua
Other Authors: Sun, Xiwei , Sun, Junling , Pan, Zhaoe , Wang, Xiwen , He, Shoupu , Xiao, Songhua , Shi, Weijun , Zhou, Zhongli , Pang, Baoyin , Wang, Liru , Liu, Jianguang , Ma, Jun , Du, Xiongming , Zhu, Jun
Format: Electronic Article Electronic Article
Language: English
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ID: E-ISSN: 19326203 ; DOI: 10.1371/journal.pone.0095882
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recordid: proquest1522726250
title: Association Mapping for Epistasis and Environmental Interaction of Yield Traits in 323 Cotton Cultivars under 9 Different Environments
format: Article
creator:
  • Jia, Yinhua
  • Sun, Xiwei
  • Sun, Junling
  • Pan, Zhaoe
  • Wang, Xiwen
  • He, Shoupu
  • Xiao, Songhua
  • Shi, Weijun
  • Zhou, Zhongli
  • Pang, Baoyin
  • Wang, Liru
  • Liu, Jianguang
  • Ma, Jun
  • Du, Xiongming
  • Zhu, Jun
subjects:
  • Gossypium Hirsutum
  • Gossypium Barbadense
  • China
  • Laboratories
  • Population
  • Lint
  • Cotton
  • Agricultural Production
  • Epistasis
  • Cotton
  • Crop Yield
  • Gene Mapping
  • Corn
  • Mapping
  • Crops
  • Genomes
  • Biology
  • Genotype & Phenotype
  • Genetic Diversity
ispartof: PLoS One, May 2014, Vol.9(5), p.e95882
description: Improving yield is a major objective for cotton breeding schemes, and lint yield and its three component traits (boll number, boll weight and lint percentage) are complex traits controlled by multiple genes and various environments. Association mapping was performed to detect markers associated with these four traits using 651 simple sequence repeats (SSRs). A mixed linear model including epistasis and environmental interaction was used to screen the loci associated with these four yield traits by 323 accessions of Gossypium hirsutum L. evaluated in nine different environments. 251 significant loci were detected to be associated with lint yield and its three components, including 69 loci with individual effects and all involved in epistasis interactions. These significant loci explain ∼ 62.05% of the phenotypic variance (ranging from 49.06% ∼ 72.29% for these four traits). It was indicated by high contribution of environmental interaction to the phenotypic variance for lint yield and boll...
language: eng
source:
identifier: E-ISSN: 19326203 ; DOI: 10.1371/journal.pone.0095882
fulltext: fulltext_linktorsrc
issn:
  • 19326203
  • 1932-6203
url: Link


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titleAssociation Mapping for Epistasis and Environmental Interaction of Yield Traits in 323 Cotton Cultivars under 9 Different Environments
creatorJia, Yinhua ; Sun, Xiwei ; Sun, Junling ; Pan, Zhaoe ; Wang, Xiwen ; He, Shoupu ; Xiao, Songhua ; Shi, Weijun ; Zhou, Zhongli ; Pang, Baoyin ; Wang, Liru ; Liu, Jianguang ; Ma, Jun ; Du, Xiongming ; Zhu, Jun
ispartofPLoS One, May 2014, Vol.9(5), p.e95882
identifierE-ISSN: 19326203 ; DOI: 10.1371/journal.pone.0095882
subjectGossypium Hirsutum ; Gossypium Barbadense ; China ; Laboratories ; Population ; Lint ; Cotton ; Agricultural Production ; Epistasis ; Cotton ; Crop Yield ; Gene Mapping ; Corn ; Mapping ; Crops ; Genomes ; Biology ; Genotype & Phenotype ; Genetic Diversity
descriptionImproving yield is a major objective for cotton breeding schemes, and lint yield and its three component traits (boll number, boll weight and lint percentage) are complex traits controlled by multiple genes and various environments. Association mapping was performed to detect markers associated with these four traits using 651 simple sequence repeats (SSRs). A mixed linear model including epistasis and environmental interaction was used to screen the loci associated with these four yield traits by 323 accessions of Gossypium hirsutum L. evaluated in nine different environments. 251 significant loci were detected to be associated with lint yield and its three components, including 69 loci with individual effects and all involved in epistasis interactions. These significant loci explain ∼ 62.05% of the phenotypic variance (ranging from 49.06% ∼ 72.29% for these four traits). It was indicated by high contribution of environmental interaction to the phenotypic variance for lint yield and boll...
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titleAssociation Mapping for Epistasis and Environmental Interaction of Yield Traits in 323 Cotton Cultivars under 9 Different Environments
descriptionImproving yield is a major objective for cotton breeding schemes, and lint yield and its three component traits (boll number, boll weight and lint percentage) are complex traits controlled by multiple genes and various environments. Association mapping was performed to detect markers associated with these four traits using 651 simple sequence repeats (SSRs). A mixed linear model including epistasis and environmental interaction was used to screen the loci associated with these four yield traits by 323 accessions of Gossypium hirsutum L. evaluated in nine different environments. 251 significant loci were detected to be associated with lint yield and its three components, including 69 loci with individual effects and all involved in epistasis interactions. These significant loci explain ∼ 62.05% of the phenotypic variance (ranging from 49.06% ∼ 72.29% for these four traits). It was indicated by high contribution of environmental interaction to the phenotypic variance for lint yield and boll...
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titleAssociation Mapping for Epistasis and Environmental Interaction of Yield Traits in 323 Cotton Cultivars under 9 Different Environments
authorJia, Yinhua ; Sun, Xiwei ; Sun, Junling ; Pan, Zhaoe ; Wang, Xiwen ; He, Shoupu ; Xiao, Songhua ; Shi, Weijun ; Zhou, Zhongli ; Pang, Baoyin ; Wang, Liru ; Liu, Jianguang ; Ma, Jun ; Du, Xiongming ; Zhu, Jun
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3Laboratories
4Population
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7Agricultural Production
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abstractImproving yield is a major objective for cotton breeding schemes, and lint yield and its three component traits (boll number, boll weight and lint percentage) are complex traits controlled by multiple genes and various environments. Association mapping was performed to detect markers associated with these four traits using 651 simple sequence repeats (SSRs). A mixed linear model including epistasis and environmental interaction was used to screen the loci associated with these four yield traits by 323 accessions of Gossypium hirsutum L. evaluated in nine different environments. 251 significant loci were detected to be associated with lint yield and its three components, including 69 loci with individual effects and all involved in epistasis interactions. These significant loci explain ∼ 62.05% of the phenotypic variance (ranging from 49.06% ∼ 72.29% for these four traits). It was indicated by high contribution of environmental interaction to the phenotypic variance for lint yield and boll...
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