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Isolation and Genomic Characterization of a Duck-Origin GPV-Related Parvovirus from Cherry Valley Ducklings in China

A newly emerged duck parvovirus, which causes beak atrophy and dwarfism syndrome (BADS) in Cherry Valley ducks, has appeared in Northern China since March 2015. To explore the genetic diversity among waterfowl parvovirus isolates, the complete genome of an identified isolate designated SDLC01 was se... Full description

Journal Title: PLoS One Oct 2015, Vol.10(10), p.e0140284
Main Author: Chen, Hao
Other Authors: Dou, Yanguo , Tang, Yi , Zhang, Zhenjie , Zheng, Xiaoqiang , Niu, Xiaoyu , Yang, Jing , Yu, Xianglong , Diao, Youxiang
Format: Electronic Article Electronic Article
Language: English
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ID: E-ISSN: 19326203 ; DOI: 10.1371/journal.pone.0140284
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title: Isolation and Genomic Characterization of a Duck-Origin GPV-Related Parvovirus from Cherry Valley Ducklings in China
format: Article
creator:
  • Chen, Hao
  • Dou, Yanguo
  • Tang, Yi
  • Zhang, Zhenjie
  • Zheng, Xiaoqiang
  • Niu, Xiaoyu
  • Yang, Jing
  • Yu, Xianglong
  • Diao, Youxiang
subjects:
  • Beijing China
  • Asia
  • Europe
  • China
  • Parvoviridae
  • Anas Platyrhynchos Domesticus
  • Nucleotides
  • Embryos
  • Open Reading Frames
  • Phylogenetics
  • Genomes
  • Waterfowl
  • Vp1 Protein
  • Pathogenicity
  • Zoology
  • Cell Proliferation
  • Polymerase Chain Reaction
  • Genomes
  • Dwarfism
  • Pathology
ispartof: PLoS One, Oct 2015, Vol.10(10), p.e0140284
description: A newly emerged duck parvovirus, which causes beak atrophy and dwarfism syndrome (BADS) in Cherry Valley ducks, has appeared in Northern China since March 2015. To explore the genetic diversity among waterfowl parvovirus isolates, the complete genome of an identified isolate designated SDLC01 was sequenced and analyzed in the present study. Genomic sequence analysis showed that SDLC01 shared 90.8%–94.6% of nucleotide identity with goose parvovirus (GPV) isolates and 78.6%–81.6% of nucleotide identity with classical Muscovy duck parvovirus (MDPV) isolates. Phylogenetic analysis of 443 nucleotides (nt) of the fragment A showed that SDLC01 was highly similar to a mule duck isolate (strain D146/02) and close to European GPV isolates but separate from Asian GPV isolates. Analysis of the left inverted terminal repeat regions revealed that SDLC01 had two major segments deleted between positions 160–176 and 306–322 nt compared with field GPV and MDPV isolates. Phylogenetic analysis of Rep and VP1...
language: eng
source:
identifier: E-ISSN: 19326203 ; DOI: 10.1371/journal.pone.0140284
fulltext: fulltext_linktorsrc
issn:
  • 19326203
  • 1932-6203
url: Link


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titleIsolation and Genomic Characterization of a Duck-Origin GPV-Related Parvovirus from Cherry Valley Ducklings in China
creatorChen, Hao ; Dou, Yanguo ; Tang, Yi ; Zhang, Zhenjie ; Zheng, Xiaoqiang ; Niu, Xiaoyu ; Yang, Jing ; Yu, Xianglong ; Diao, Youxiang
ispartofPLoS One, Oct 2015, Vol.10(10), p.e0140284
identifierE-ISSN: 19326203 ; DOI: 10.1371/journal.pone.0140284
subjectBeijing China ; Asia ; Europe ; China ; Parvoviridae ; Anas Platyrhynchos Domesticus ; Nucleotides ; Embryos ; Open Reading Frames ; Phylogenetics ; Genomes ; Waterfowl ; Vp1 Protein ; Pathogenicity ; Zoology ; Cell Proliferation ; Polymerase Chain Reaction ; Genomes ; Dwarfism ; Pathology
descriptionA newly emerged duck parvovirus, which causes beak atrophy and dwarfism syndrome (BADS) in Cherry Valley ducks, has appeared in Northern China since March 2015. To explore the genetic diversity among waterfowl parvovirus isolates, the complete genome of an identified isolate designated SDLC01 was sequenced and analyzed in the present study. Genomic sequence analysis showed that SDLC01 shared 90.8%–94.6% of nucleotide identity with goose parvovirus (GPV) isolates and 78.6%–81.6% of nucleotide identity with classical Muscovy duck parvovirus (MDPV) isolates. Phylogenetic analysis of 443 nucleotides (nt) of the fragment A showed that SDLC01 was highly similar to a mule duck isolate (strain D146/02) and close to European GPV isolates but separate from Asian GPV isolates. Analysis of the left inverted terminal repeat regions revealed that SDLC01 had two major segments deleted between positions 160–176 and 306–322 nt compared with field GPV and MDPV isolates. Phylogenetic analysis of Rep and VP1...
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titleIsolation and Genomic Characterization of a Duck-Origin GPV-Related Parvovirus from Cherry Valley Ducklings in China
descriptionA newly emerged duck parvovirus, which causes beak atrophy and dwarfism syndrome (BADS) in Cherry Valley ducks, has appeared in Northern China since March 2015. To explore the genetic diversity among waterfowl parvovirus isolates, the complete genome of an identified isolate designated SDLC01 was sequenced and analyzed in the present study. Genomic sequence analysis showed that SDLC01 shared 90.8%–94.6% of nucleotide identity with goose parvovirus (GPV) isolates and 78.6%–81.6% of nucleotide identity with classical Muscovy duck parvovirus (MDPV) isolates. Phylogenetic analysis of 443 nucleotides (nt) of the fragment A showed that SDLC01 was highly similar to a mule duck isolate (strain D146/02) and close to European GPV isolates but separate from Asian GPV isolates. Analysis of the left inverted terminal repeat regions revealed that SDLC01 had two major segments deleted between positions 160–176 and 306–322 nt compared with field GPV and MDPV isolates. Phylogenetic analysis of Rep and VP1...
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titleIsolation and Genomic Characterization of a Duck-Origin GPV-Related Parvovirus from Cherry Valley Ducklings in China
authorChen, Hao ; Dou, Yanguo ; Tang, Yi ; Zhang, Zhenjie ; Zheng, Xiaoqiang ; Niu, Xiaoyu ; Yang, Jing ; Yu, Xianglong ; Diao, Youxiang
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8Open Reading Frames
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atitleIsolation and Genomic Characterization of a Duck-Origin GPV-Related Parvovirus from Cherry Valley Ducklings in China
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abstractA newly emerged duck parvovirus, which causes beak atrophy and dwarfism syndrome (BADS) in Cherry Valley ducks, has appeared in Northern China since March 2015. To explore the genetic diversity among waterfowl parvovirus isolates, the complete genome of an identified isolate designated SDLC01 was sequenced and analyzed in the present study. Genomic sequence analysis showed that SDLC01 shared 90.8%–94.6% of nucleotide identity with goose parvovirus (GPV) isolates and 78.6%–81.6% of nucleotide identity with classical Muscovy duck parvovirus (MDPV) isolates. Phylogenetic analysis of 443 nucleotides (nt) of the fragment A showed that SDLC01 was highly similar to a mule duck isolate (strain D146/02) and close to European GPV isolates but separate from Asian GPV isolates. Analysis of the left inverted terminal repeat regions revealed that SDLC01 had two major segments deleted between positions 160–176 and 306–322 nt compared with field GPV and MDPV isolates. Phylogenetic analysis of Rep and VP1...
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