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Hepatic transcriptome analysis and identification of differentially expressed genes response to dietary oxidized fish oil in loach Misgurnus anguillicaudatus.

RNA sequencing and short-read assembly were utilized to produce a transcriptome of livers from loaches ( Misgurnus anguillicaudatus ) fed with three different diets respectively containing fresh fish oil (FO group), medium oxidized fish oil (MO group) and high oxidized fish oil (HO group). A total o... Full description

Journal Title: PloS one 2017, Vol.12(2), p.e0172386
Main Author: Zhang, Yin
Other Authors: Li, Yang , Liang, Xiao , Cao, Xiaojuan , Huang, Longfei , Yan, Jie , Wei, Yanxing , Gao, Jian
Format: Electronic Article Electronic Article
Language: English
Subjects:
ID: E-ISSN: 1932-6203 ; DOI: 1932-6203 ; DOI: 10.1371/journal.pone.0172386
Link: http://search.proquest.com/docview/1869964680/?pq-origsite=primo
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title: Hepatic transcriptome analysis and identification of differentially expressed genes response to dietary oxidized fish oil in loach Misgurnus anguillicaudatus.
format: Article
creator:
  • Zhang, Yin
  • Li, Yang
  • Liang, Xiao
  • Cao, Xiaojuan
  • Huang, Longfei
  • Yan, Jie
  • Wei, Yanxing
  • Gao, Jian
subjects:
  • Animals–Genetics
  • Cypriniformes–Pharmacology
  • Dietary Fats–Chemistry
  • Fish Oils–Drug Effects
  • Liver–Metabolism
  • Molecular Sequence Annotation–Drug Effects
  • Oxidation-Reduction–Drug Effects
  • Transcriptome–Drug Effects
  • Dietary Fats
  • Fish Oils
ispartof: PloS one, 2017, Vol.12(2), p.e0172386
description: RNA sequencing and short-read assembly were utilized to produce a transcriptome of livers from loaches ( Misgurnus anguillicaudatus ) fed with three different diets respectively containing fresh fish oil (FO group), medium oxidized fish oil (MO group) and high oxidized fish oil (HO group). A total of 60,663 unigenes were obtained in this study, with mean length 848.74 bp. 50,814, 49,584 and 49,814 unigenes were respectively obtained from FO, MO and HO groups. There were 2,343 differentially expressed genes between FO and MO, with 855 down- and 1,488 up-regulated genes in the MO group. 2,813 genes were differentially expressed between FO and HO, including 1,256 down- and 1,552 up-regulated genes in the HO group. 2,075 differentially expressed genes were found in the comparison of MO and HO, including 1,074 up- and 1,001 down-regulated genes in the MO group. Some differentially expressed genes, such as fatty acid transport protein ( fatp ), fatty acid binding protein ( fabp ), apolipoprotein ( apo ), peroxisome proliferator activated receptor-gamma ( ppar-γ ), acetyl-CoA synthetase ( acs ) and arachidonate 5-lipoxygenase ( alox5 ), were involved in lipid metabolism, suggesting these genes in the loach were responsive to dietary oxidized fish oil. Results of transcriptome profilings here were validated using quantitative real time PCR in fourteen randomly selected unigenes. The present study provides insights into hepatic transcriptome profile of the loach, which is a valuable resource for studies of loach genomics. More importantly, this study identifies some important genes responsible for dietary oxidized fish oil, which will benefit researches of lipid metabolism in fish.
language: eng
source:
identifier: E-ISSN: 1932-6203 ; DOI: 1932-6203 ; DOI: 10.1371/journal.pone.0172386
fulltext: fulltext
issn:
  • 19326203
  • 1932-6203
url: Link


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titleHepatic transcriptome analysis and identification of differentially expressed genes response to dietary oxidized fish oil in loach Misgurnus anguillicaudatus.
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descriptionRNA sequencing and short-read assembly were utilized to produce a transcriptome of livers from loaches ( Misgurnus anguillicaudatus ) fed with three different diets respectively containing fresh fish oil (FO group), medium oxidized fish oil (MO group) and high oxidized fish oil (HO group). A total of 60,663 unigenes were obtained in this study, with mean length 848.74 bp. 50,814, 49,584 and 49,814 unigenes were respectively obtained from FO, MO and HO groups. There were 2,343 differentially expressed genes between FO and MO, with 855 down- and 1,488 up-regulated genes in the MO group. 2,813 genes were differentially expressed between FO and HO, including 1,256 down- and 1,552 up-regulated genes in the HO group. 2,075 differentially expressed genes were found in the comparison of MO and HO, including 1,074 up- and 1,001 down-regulated genes in the MO group. Some differentially expressed genes, such as fatty acid transport protein ( fatp ), fatty acid binding protein ( fabp ), apolipoprotein ( apo ), peroxisome proliferator activated receptor-gamma ( ppar-γ ), acetyl-CoA synthetase ( acs ) and arachidonate 5-lipoxygenase ( alox5 ), were involved in lipid metabolism, suggesting these genes in the loach were responsive to dietary oxidized fish oil. Results of transcriptome profilings here were validated using quantitative real time PCR in fourteen randomly selected unigenes. The present study provides insights into hepatic transcriptome profile of the loach, which is a valuable resource for studies of loach genomics. More importantly, this study identifies some important genes responsible for dietary oxidized fish oil, which will benefit researches of lipid metabolism in fish.
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