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In-Depth Transcriptome Analysis of the Red Swamp Crayfish Procambarus clarkii

The red swamp crayfish Procambarus clarkii is a highly adaptable, tolerant, and fecund freshwater crayfish that inhabits a wide range of aquatic environments. It is an important crustacean model organism that is used in many research fields, including animal behavior, environmental stress and toxici... Full description

Journal Title: PLoS One Oct 2014, Vol.9(10), p.e110548
Main Author: Shen, Huaishun
Other Authors: Hu, Yacheng , Ma, Yuanchao , Zhou, Xin , Xu, Zenghong , Yan, Shui , Li, Chunyan , Xu, Peng , Sun, Xiaowen
Format: Electronic Article Electronic Article
Language: English
Subjects:
ID: E-ISSN: 19326203 ; DOI: 10.1371/journal.pone.0110548
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recordid: proquest2014740347
title: In-Depth Transcriptome Analysis of the Red Swamp Crayfish Procambarus clarkii
format: Article
creator:
  • Shen, Huaishun
  • Hu, Yacheng
  • Ma, Yuanchao
  • Zhou, Xin
  • Xu, Zenghong
  • Yan, Shui
  • Li, Chunyan
  • Xu, Peng
  • Sun, Xiaowen
subjects:
  • Callinectes Sapidus
  • Procambarus Clarkii
  • United States–Us
  • China
  • Beijing China
  • Macrobrachium Rosenbergii
  • Crustacea
  • Litopenaeus Vannamei
  • Macrobrachium Nipponense
  • Eriocheir Sinensis
  • Laboratories
  • Toxicity
  • Animal Behavior
  • Genomics
  • Toxicity
  • Gene Expression
  • Immunity
  • Gene Sequencing
  • Gene Expression
ispartof: PLoS One, Oct 2014, Vol.9(10), p.e110548
description: The red swamp crayfish Procambarus clarkii is a highly adaptable, tolerant, and fecund freshwater crayfish that inhabits a wide range of aquatic environments. It is an important crustacean model organism that is used in many research fields, including animal behavior, environmental stress and toxicity, and studies of viral infection. Despite its widespread use, knowledge of the crayfish genome is very limited and insufficient for meaningful research. This is the use of next-generation sequencing techniques to analyze the crayfish transcriptome. A total of 324.97 million raw reads of 100 base pairs were generated, and a total of 88,463 transcripts were assembled de novo using Trinity software, producing 55,278 non-redundant transcripts. Comparison of digital gene expression between four different tissues revealed differentially expressed genes, in which more overexpressed genes were found in the hepatopancreas than in other tissues, and more underexpressed genes were found in the testis...
language: eng
source:
identifier: E-ISSN: 19326203 ; DOI: 10.1371/journal.pone.0110548
fulltext: fulltext_linktorsrc
issn:
  • 19326203
  • 1932-6203
url: Link


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titleIn-Depth Transcriptome Analysis of the Red Swamp Crayfish Procambarus clarkii
creatorShen, Huaishun ; Hu, Yacheng ; Ma, Yuanchao ; Zhou, Xin ; Xu, Zenghong ; Yan, Shui ; Li, Chunyan ; Xu, Peng ; Sun, Xiaowen
ispartofPLoS One, Oct 2014, Vol.9(10), p.e110548
identifierE-ISSN: 19326203 ; DOI: 10.1371/journal.pone.0110548
subjectCallinectes Sapidus ; Procambarus Clarkii ; United States–Us ; China ; Beijing China ; Macrobrachium Rosenbergii ; Crustacea ; Litopenaeus Vannamei ; Macrobrachium Nipponense ; Eriocheir Sinensis ; Laboratories ; Toxicity ; Animal Behavior ; Genomics ; Toxicity ; Gene Expression ; Immunity ; Gene Sequencing ; Gene Expression
descriptionThe red swamp crayfish Procambarus clarkii is a highly adaptable, tolerant, and fecund freshwater crayfish that inhabits a wide range of aquatic environments. It is an important crustacean model organism that is used in many research fields, including animal behavior, environmental stress and toxicity, and studies of viral infection. Despite its widespread use, knowledge of the crayfish genome is very limited and insufficient for meaningful research. This is the use of next-generation sequencing techniques to analyze the crayfish transcriptome. A total of 324.97 million raw reads of 100 base pairs were generated, and a total of 88,463 transcripts were assembled de novo using Trinity software, producing 55,278 non-redundant transcripts. Comparison of digital gene expression between four different tissues revealed differentially expressed genes, in which more overexpressed genes were found in the hepatopancreas than in other tissues, and more underexpressed genes were found in the testis...
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titleIn-Depth Transcriptome Analysis of the Red Swamp Crayfish Procambarus clarkii
descriptionThe red swamp crayfish Procambarus clarkii is a highly adaptable, tolerant, and fecund freshwater crayfish that inhabits a wide range of aquatic environments. It is an important crustacean model organism that is used in many research fields, including animal behavior, environmental stress and toxicity, and studies of viral infection. Despite its widespread use, knowledge of the crayfish genome is very limited and insufficient for meaningful research. This is the use of next-generation sequencing techniques to analyze the crayfish transcriptome. A total of 324.97 million raw reads of 100 base pairs were generated, and a total of 88,463 transcripts were assembled de novo using Trinity software, producing 55,278 non-redundant transcripts. Comparison of digital gene expression between four different tissues revealed differentially expressed genes, in which more overexpressed genes were found in the hepatopancreas than in other tissues, and more underexpressed genes were found in the testis...
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titleIn-Depth Transcriptome Analysis of the Red Swamp Crayfish Procambarus clarkii
authorShen, Huaishun ; Hu, Yacheng ; Ma, Yuanchao ; Zhou, Xin ; Xu, Zenghong ; Yan, Shui ; Li, Chunyan ; Xu, Peng ; Sun, Xiaowen
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abstractThe red swamp crayfish Procambarus clarkii is a highly adaptable, tolerant, and fecund freshwater crayfish that inhabits a wide range of aquatic environments. It is an important crustacean model organism that is used in many research fields, including animal behavior, environmental stress and toxicity, and studies of viral infection. Despite its widespread use, knowledge of the crayfish genome is very limited and insufficient for meaningful research. This is the use of next-generation sequencing techniques to analyze the crayfish transcriptome. A total of 324.97 million raw reads of 100 base pairs were generated, and a total of 88,463 transcripts were assembled de novo using Trinity software, producing 55,278 non-redundant transcripts. Comparison of digital gene expression between four different tissues revealed differentially expressed genes, in which more overexpressed genes were found in the hepatopancreas than in other tissues, and more underexpressed genes were found in the testis...
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