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Integrated analysis of environmental and genetic influences on cord blood DNA methylation in new-borns.

Epigenetic processes, including DNA methylation (DNAm), are among the mechanisms allowing integration of genetic and environmental factors to shape cellular function. While many studies have investigated either environmental or genetic contributions to DNAm, few have assessed their integrated effect... Full description

Journal Title: Nature communications June 11, 2019, Vol.10(1), p.2548
Main Author: Czamara, Darina
Other Authors: Eraslan, Gökçen , Page, Christian M , Lahti, Jari , Lahti-Pulkkinen, Marius , Hämäläinen, Esa , Kajantie, Eero , Laivuori, Hannele , Villa, Pia M , Reynolds, Rebecca M , Nystad, Wenche , Håberg, Siri E , London, Stephanie J , O'Donnell, Kieran J , Garg, Elika , Meaney, Michael J , Entringer, Sonja , Wadhwa, Pathik D , Buss, Claudia , Jones, Meaghan J , Lin, David T S , Macisaac, Julie L , Kobor, Michael S , Koen, Nastassja , Zar, Heather J , Koenen, Karestan C , Dalvie, Shareefa , Stein, Dan J , Kondofersky, Ivan , Müller, Nikola S , Theis, Fabian J , Räikkönen, Katri , Binder, Elisabeth B , Czamara, Darina
Format: Electronic Article Electronic Article
Language: English
Subjects:
DNA
ID: E-ISSN: 2041-1723 ; DOI: 2041-1723 ; DOI: 10.1038/s41467-019-10461-0
Link: http://search.proquest.com/docview/2245657523/?pq-origsite=primo
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title: Integrated analysis of environmental and genetic influences on cord blood DNA methylation in new-borns.
format: Article
creator:
  • Czamara, Darina
  • Eraslan, Gökçen
  • Page, Christian M
  • Lahti, Jari
  • Lahti-Pulkkinen, Marius
  • Hämäläinen, Esa
  • Kajantie, Eero
  • Laivuori, Hannele
  • Villa, Pia M
  • Reynolds, Rebecca M
  • Nystad, Wenche
  • Håberg, Siri E
  • London, Stephanie J
  • O'Donnell, Kieran J
  • Garg, Elika
  • Meaney, Michael J
  • Entringer, Sonja
  • Wadhwa, Pathik D
  • Buss, Claudia
  • Jones, Meaghan J
  • Lin, David T S
  • Macisaac, Julie L
  • Kobor, Michael S
  • Koen, Nastassja
  • Zar, Heather J
  • Koenen, Karestan C
  • Dalvie, Shareefa
  • Stein, Dan J
  • Kondofersky, Ivan
  • Müller, Nikola S
  • Theis, Fabian J
  • Räikkönen, Katri
  • Binder, Elisabeth B
  • Czamara, Darina
subjects:
  • Cohort Studies–Blood
  • DNA–Genetics
  • DNA Methylation–Genetics
  • Epigenesis, Genetic–Genetics
  • Female–Genetics
  • Fetal Blood–Genetics
  • Gene-Environment Interaction–Genetics
  • Genotype–Genetics
  • Humans–Genetics
  • Infant, Newborn–Genetics
  • Male–Genetics
  • Pregnancy–Genetics
  • Risk Factors–Genetics
  • DNA
ispartof: Nature communications, June 11, 2019, Vol.10(1), p.2548
description: Epigenetic processes, including DNA methylation (DNAm), are among the mechanisms allowing integration of genetic and environmental factors to shape cellular function. While many studies have investigated either environmental or genetic contributions to DNAm, few have assessed their integrated effects. Here we examine the relative contributions of prenatal environmental factors and genotype on DNA methylation in neonatal blood at variably methylated regions (VMRs) in 4 independent cohorts (overall n  = 2365). We use Akaike’s information criterion to test which factors best explain variability of methylation in the cohort-specific VMRs: several prenatal environmental factors (E), genotypes in cis (G), or their additive (G + E) or interaction (GxE) effects. Genetic and environmental factors in combination best explain DNAm at the majority of VMRs. The CpGs best explained by either G, G + E or GxE are functionally distinct. The enrichment of genetic variants from GxE models in GWAS for complex disorders supports their importance for disease risk. Environmental influences during prenatal development may have implications for health and disease later in life. Here, Czamara et al. assess DNA methylation in cord blood from new-born under various models including environmental and genetic effects individually and their additive or interaction effects.
language: eng
source:
identifier: E-ISSN: 2041-1723 ; DOI: 2041-1723 ; DOI: 10.1038/s41467-019-10461-0
fulltext: fulltext
issn:
  • 20411723
  • 2041-1723
url: Link


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titleIntegrated analysis of environmental and genetic influences on cord blood DNA methylation in new-borns.
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ispartofNature communications, June 11, 2019, Vol.10(1), p.2548
identifier
subjectCohort Studies–Blood ; DNA–Genetics ; DNA Methylation–Genetics ; Epigenesis, Genetic–Genetics ; Female–Genetics ; Fetal Blood–Genetics ; Gene-Environment Interaction–Genetics ; Genotype–Genetics ; Humans–Genetics ; Infant, Newborn–Genetics ; Male–Genetics ; Pregnancy–Genetics ; Risk Factors–Genetics ; DNA
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descriptionEpigenetic processes, including DNA methylation (DNAm), are among the mechanisms allowing integration of genetic and environmental factors to shape cellular function. While many studies have investigated either environmental or genetic contributions to DNAm, few have assessed their integrated effects. Here we examine the relative contributions of prenatal environmental factors and genotype on DNA methylation in neonatal blood at variably methylated regions (VMRs) in 4 independent cohorts (overall n  = 2365). We use Akaike’s information criterion to test which factors best explain variability of methylation in the cohort-specific VMRs: several prenatal environmental factors (E), genotypes in cis (G), or their additive (G + E) or interaction (GxE) effects. Genetic and environmental factors in combination best explain DNAm at the majority of VMRs. The CpGs best explained by either G, G + E or GxE are functionally distinct. The enrichment of genetic variants from GxE models in GWAS for complex disorders supports their importance for disease risk. Environmental influences during prenatal development may have implications for health and disease later in life. Here, Czamara et al. assess DNA methylation in cord blood from new-born under various models including environmental and genetic effects individually and their additive or interaction effects.
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0Czamara, Darina
1Eraslan, Gökçen
2Page, Christian M
3Lahti, Jari
4Lahti-Pulkkinen, Marius
5Hämäläinen, Esa
6Kajantie, Eero
7Laivuori, Hannele
8Villa, Pia M
9Reynolds, Rebecca M
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12London, Stephanie J
13O'Donnell, Kieran J
14Garg, Elika
15Meaney, Michael J
16Entringer, Sonja
17Wadhwa, Pathik D
18Buss, Claudia
19Jones, Meaghan J
20Lin, David T S
21Macisaac, Julie L
22Kobor, Michael S
23Koen, Nastassja
24Zar, Heather J
25Koenen, Karestan C
26Dalvie, Shareefa
27Stein, Dan J
28Kondofersky, Ivan
29Müller, Nikola S
30Theis, Fabian J
31Räikkönen, Katri
32Binder, Elisabeth B
titleIntegrated analysis of environmental and genetic influences on cord blood DNA methylation in new-borns.
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0Cohort Studies–Blood
1DNA–Genetics
2DNA Methylation–Genetics
3Epigenesis, Genetic–Genetics
4Female–Genetics
5Fetal Blood–Genetics
6Gene-Environment Interaction–Genetics
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8Humans–Genetics
9Infant, Newborn–Genetics
10Male–Genetics
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12Beekman, Aartjan T F
13Bigdeli, Tim B
14Blackwood, Douglas H R
15Bryois, Julien
16Buttenschøn, Henriette N
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18Cai, Na
19Castelao, Enrique
20Christensen, Jane Hvarregaard
21Clarke, Toni-Kim
22Coleman, Jonathan R I
23Colodro-Conde, Lucía
24Couvy-Duchesne, Baptiste
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citationpf 2548 pt 2548 vol 10 issue 1
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titleIntegrated analysis of environmental and genetic influences on cord blood DNA methylation in new-borns.
authorCzamara, Darina ; Eraslan, Gökçen ; Page, Christian M ; Lahti, Jari ; Lahti-Pulkkinen, Marius ; Hämäläinen, Esa ; Kajantie, Eero ; Laivuori, Hannele ; Villa, Pia M ; Reynolds, Rebecca M ; Nystad, Wenche ; Håberg, Siri E ; London, Stephanie J ; O'Donnell, Kieran J ; Garg, Elika ; Meaney, Michael J ; Entringer, Sonja ; Wadhwa, Pathik D ; Buss, Claudia ; Jones, Meaghan J ; Lin, David T S ; Macisaac, Julie L ; Kobor, Michael S ; Koen, Nastassja ; Zar, Heather J ; Koenen, Karestan C ; Dalvie, Shareefa ; Stein, Dan J ; Kondofersky, Ivan ; Müller, Nikola S ; Theis, Fabian J ; Räikkönen, Katri ; Binder, Elisabeth B ; Czamara, Darina
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1DNA–Genetics
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3Epigenesis, Genetic–Genetics
4Female–Genetics
5Fetal Blood–Genetics
6Gene-Environment Interaction–Genetics
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28Kondofersky, Ivan
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31Räikkönen, Katri
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36Kiadeh, Farnush Farhadi Hassan
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38Forstner, Andreas J
39Frank, Josef
40Gaspar, Héléna A
41Gill, Michael
42Goes, Fernando S
43Gordon, Scott D
44Grove, Jakob
45Hall, Lynsey S
46Hansen, Christine Søholm
47Hansen, Thomas F
48Herms, Stefan
49Hickie, Ian B
50Hoffmann, Per
51Homuth, Georg
52Horn, Carsten
53Hottenga, Jouke-Jan
54Hougaard, David M
55Ising, Marcus
56Jansen, Rick
57Jorgenson, Eric
58Knowles, James A
59Kohane, Isaac S
60Kraft, Julia
61Kretzschmar, Warren W
62Krogh, Jesper
63Kutalik, Zoltán
64Li, Yihan
65Lind, Penelope A
66MacIntyre, Donald J
67MacKinnon, Dean F
68Maier, Robert M
69Maier, Wolfgang
70Marchini, Jonathan
71Mbarek, Hamdi
72McGrath, Patrick
73McGuffin, Peter
74Medland, Sarah E
75Mehta, Divya
76Middeldorp, Christel M
77Mihailov, Evelin
78Milaneschi, Yuri
79Milani, Lili
80Mondimore, Francis M
81Montgomery, Grant W
82Mostafavi, Sara
83Mullins, Niamh
84Nauck, Matthias
85Ng, Bernard
86Nivard, Michel G
87Nyholt, Dale R
88O'Reilly, Paul F
89Oskarsson, Hogni
90Owen, Michael J
91Painter, Jodie N
92Pedersen, Carsten Bøcker
93Pedersen, Marianne Giørtz
94Peterson, Roseann E
95Pettersson, Erik
96Peyrot, Wouter J
97Pistis, Giorgio
98Posthuma, Danielle
99Quiroz, Jorge A
100...
atitleIntegrated analysis of environmental and genetic influences on cord blood DNA methylation in new-borns.
jtitleNature communications
risdate20190611
volume10
issue1
spage2548
epage2548
pages2548
eissn2041-1723
formatjournal
genrearticle
ristypeJOUR
doi10.1038/s41467-019-10461-0
urlhttp://search.proquest.com/docview/2245657523/
orcidid0000-0001-7381-904X
date2019-06-11